Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3483

Experiment: nitrogen source nitrite 0.1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3481 and Pf1N1B4_3482 are separated by 147 nucleotidesPf1N1B4_3482 and Pf1N1B4_3483 are separated by 192 nucleotidesPf1N1B4_3483 and Pf1N1B4_3484 overlap by 4 nucleotides Pf1N1B4_3481 - Dienelactone hydrolase family, at 3,888,284 to 3,889,075 _3481 Pf1N1B4_3482 - outer membrane protein H1, at 3,889,223 to 3,889,825 _3482 Pf1N1B4_3483 - Transcriptional regulatory protein PhoP, at 3,890,018 to 3,890,695 _3483 Pf1N1B4_3484 - Sensor protein PhoQ (EC 2.7.13.3), at 3,890,692 to 3,892,038 _3484 Position (kb) 3890 3891Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3889.090 kb on - strandat 3889.090 kb on - strandat 3889.092 kb on + strandat 3889.092 kb on + strandat 3889.092 kb on + strandat 3889.092 kb on + strandat 3889.093 kb on - strandat 3889.093 kb on - strandat 3889.093 kb on - strandat 3889.093 kb on - strandat 3889.112 kb on + strandat 3889.112 kb on + strandat 3889.112 kb on + strandat 3889.112 kb on + strandat 3889.113 kb on - strandat 3889.113 kb on - strandat 3889.157 kb on + strandat 3889.173 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.201 kb on + strandat 3889.202 kb on - strandat 3889.202 kb on - strandat 3889.202 kb on - strandat 3889.202 kb on - strandat 3889.228 kb on + strandat 3889.229 kb on - strandat 3889.234 kb on + strandat 3889.235 kb on - strandat 3889.339 kb on + strand, within Pf1N1B4_3482at 3889.454 kb on + strand, within Pf1N1B4_3482at 3889.454 kb on + strand, within Pf1N1B4_3482at 3889.454 kb on + strand, within Pf1N1B4_3482at 3889.454 kb on + strand, within Pf1N1B4_3482at 3889.454 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.463 kb on + strand, within Pf1N1B4_3482at 3889.464 kb on - strand, within Pf1N1B4_3482at 3889.464 kb on - strand, within Pf1N1B4_3482at 3889.464 kb on - strandat 3889.495 kb on + strand, within Pf1N1B4_3482at 3889.495 kb on + strand, within Pf1N1B4_3482at 3889.495 kb on + strand, within Pf1N1B4_3482at 3889.495 kb on + strand, within Pf1N1B4_3482at 3889.495 kb on + strand, within Pf1N1B4_3482at 3889.526 kb on + strand, within Pf1N1B4_3482at 3889.526 kb on + strand, within Pf1N1B4_3482at 3889.526 kb on + strand, within Pf1N1B4_3482at 3889.526 kb on + strand, within Pf1N1B4_3482at 3889.526 kb on + strand, within Pf1N1B4_3482at 3889.526 kb on + strand, within Pf1N1B4_3482at 3889.538 kb on + strand, within Pf1N1B4_3482at 3889.665 kb on + strand, within Pf1N1B4_3482at 3889.665 kb on + strand, within Pf1N1B4_3482at 3889.665 kb on + strand, within Pf1N1B4_3482at 3889.665 kb on + strand, within Pf1N1B4_3482at 3889.665 kb on + strand, within Pf1N1B4_3482at 3889.665 kb on + strand, within Pf1N1B4_3482at 3889.665 kb on + strand, within Pf1N1B4_3482at 3889.712 kb on + strand, within Pf1N1B4_3482at 3889.799 kb on + strandat 3889.799 kb on + strandat 3889.799 kb on + strandat 3889.799 kb on + strandat 3889.799 kb on + strandat 3889.799 kb on + strandat 3889.799 kb on + strandat 3889.800 kb on - strandat 3889.814 kb on + strandat 3889.814 kb on + strandat 3889.814 kb on + strandat 3889.814 kb on + strandat 3889.814 kb on + strandat 3889.823 kb on + strandat 3889.823 kb on + strandat 3889.823 kb on + strandat 3889.824 kb on - strandat 3889.824 kb on - strandat 3889.835 kb on + strandat 3889.835 kb on + strandat 3889.836 kb on - strandat 3889.980 kb on + strandat 3889.980 kb on + strandat 3889.980 kb on + strandat 3890.017 kb on + strandat 3890.129 kb on + strand, within Pf1N1B4_3483at 3890.309 kb on + strand, within Pf1N1B4_3483at 3890.309 kb on + strand, within Pf1N1B4_3483at 3890.309 kb on + strand, within Pf1N1B4_3483at 3890.309 kb on + strand, within Pf1N1B4_3483at 3890.309 kb on + strand, within Pf1N1B4_3483at 3890.309 kb on + strand, within Pf1N1B4_3483at 3890.309 kb on + strand, within Pf1N1B4_3483at 3890.310 kb on - strand, within Pf1N1B4_3483at 3890.475 kb on - strand, within Pf1N1B4_3483at 3890.495 kb on + strand, within Pf1N1B4_3483at 3890.495 kb on + strand, within Pf1N1B4_3483at 3890.496 kb on - strand, within Pf1N1B4_3483at 3890.496 kb on - strand, within Pf1N1B4_3483at 3890.938 kb on + strand, within Pf1N1B4_3484at 3890.938 kb on + strand, within Pf1N1B4_3484at 3890.939 kb on - strand, within Pf1N1B4_3484at 3890.944 kb on + strand, within Pf1N1B4_3484at 3890.944 kb on + strand, within Pf1N1B4_3484at 3890.944 kb on + strand, within Pf1N1B4_3484at 3890.944 kb on + strand, within Pf1N1B4_3484at 3890.944 kb on + strand, within Pf1N1B4_3484at 3890.944 kb on + strand, within Pf1N1B4_3484at 3890.944 kb on + strand, within Pf1N1B4_3484at 3890.944 kb on + strand, within Pf1N1B4_3484at 3890.944 kb on + strand, within Pf1N1B4_3484at 3890.945 kb on - strand, within Pf1N1B4_3484at 3891.004 kb on + strand, within Pf1N1B4_3484at 3891.004 kb on + strand, within Pf1N1B4_3484at 3891.079 kb on + strand, within Pf1N1B4_3484at 3891.079 kb on + strand, within Pf1N1B4_3484at 3891.079 kb on + strand, within Pf1N1B4_3484

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM
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3,889,090 - -0.2
3,889,090 - -1.6
3,889,092 + +2.0
3,889,092 + +1.0
3,889,092 + +1.3
3,889,092 + +0.6
3,889,093 - -1.3
3,889,093 - +0.8
3,889,093 - +0.5
3,889,093 - +0.5
3,889,112 + +0.2
3,889,112 + +0.3
3,889,112 + +1.1
3,889,112 + +0.4
3,889,113 - -0.0
3,889,113 - +1.1
3,889,157 + +0.6
3,889,173 + -1.3
3,889,201 + -0.1
3,889,201 + +0.3
3,889,201 + -0.5
3,889,201 + +0.2
3,889,201 + -2.4
3,889,201 + +0.6
3,889,201 + +0.6
3,889,201 + +1.3
3,889,201 + +0.1
3,889,201 + +1.0
3,889,201 + +0.1
3,889,201 + +1.2
3,889,201 + +0.0
3,889,201 + -0.9
3,889,201 + +0.3
3,889,201 + +0.9
3,889,202 - +0.5
3,889,202 - -0.2
3,889,202 - +0.8
3,889,202 - -0.5
3,889,228 + +0.3
3,889,229 - -0.1
3,889,234 + +0.2
3,889,235 - +0.1
3,889,339 + Pf1N1B4_3482 0.19 -0.6
3,889,454 + Pf1N1B4_3482 0.38 -0.1
3,889,454 + Pf1N1B4_3482 0.38 -0.6
3,889,454 + Pf1N1B4_3482 0.38 +0.6
3,889,454 + Pf1N1B4_3482 0.38 -0.0
3,889,454 + Pf1N1B4_3482 0.38 -0.7
3,889,463 + Pf1N1B4_3482 0.40 -1.0
3,889,463 + Pf1N1B4_3482 0.40 -0.2
3,889,463 + Pf1N1B4_3482 0.40 +0.7
3,889,463 + Pf1N1B4_3482 0.40 -0.5
3,889,463 + Pf1N1B4_3482 0.40 +0.5
3,889,463 + Pf1N1B4_3482 0.40 -0.5
3,889,463 + Pf1N1B4_3482 0.40 +0.6
3,889,463 + Pf1N1B4_3482 0.40 +0.0
3,889,463 + Pf1N1B4_3482 0.40 +0.2
3,889,463 + Pf1N1B4_3482 0.40 +0.4
3,889,463 + Pf1N1B4_3482 0.40 -0.9
3,889,464 - Pf1N1B4_3482 0.40 +1.2
3,889,464 - Pf1N1B4_3482 0.40 -0.7
3,889,464 - +1.7
3,889,495 + Pf1N1B4_3482 0.45 -0.1
3,889,495 + Pf1N1B4_3482 0.45 -0.7
3,889,495 + Pf1N1B4_3482 0.45 -1.7
3,889,495 + Pf1N1B4_3482 0.45 +0.9
3,889,495 + Pf1N1B4_3482 0.45 -0.8
3,889,526 + Pf1N1B4_3482 0.50 +0.7
3,889,526 + Pf1N1B4_3482 0.50 -0.1
3,889,526 + Pf1N1B4_3482 0.50 +0.1
3,889,526 + Pf1N1B4_3482 0.50 -0.1
3,889,526 + Pf1N1B4_3482 0.50 -0.4
3,889,526 + Pf1N1B4_3482 0.50 -0.3
3,889,538 + Pf1N1B4_3482 0.52 -1.2
3,889,665 + Pf1N1B4_3482 0.73 +0.9
3,889,665 + Pf1N1B4_3482 0.73 -0.1
3,889,665 + Pf1N1B4_3482 0.73 +0.5
3,889,665 + Pf1N1B4_3482 0.73 +0.1
3,889,665 + Pf1N1B4_3482 0.73 -1.1
3,889,665 + Pf1N1B4_3482 0.73 -1.6
3,889,665 + Pf1N1B4_3482 0.73 +0.0
3,889,712 + Pf1N1B4_3482 0.81 +0.5
3,889,799 + -0.2
3,889,799 + +0.9
3,889,799 + +2.3
3,889,799 + +2.1
3,889,799 + +0.1
3,889,799 + -0.2
3,889,799 + -0.8
3,889,800 - +1.5
3,889,814 + -0.2
3,889,814 + -0.0
3,889,814 + +0.1
3,889,814 + +0.3
3,889,814 + -0.8
3,889,823 + -2.2
3,889,823 + +0.5
3,889,823 + -2.2
3,889,824 - +0.9
3,889,824 - -1.2
3,889,835 + +1.5
3,889,835 + -1.4
3,889,836 - -0.9
3,889,980 + -1.0
3,889,980 + +0.4
3,889,980 + -0.6
3,890,017 + -0.6
3,890,129 + Pf1N1B4_3483 0.16 +0.3
3,890,309 + Pf1N1B4_3483 0.43 +0.3
3,890,309 + Pf1N1B4_3483 0.43 +1.0
3,890,309 + Pf1N1B4_3483 0.43 -2.5
3,890,309 + Pf1N1B4_3483 0.43 -0.3
3,890,309 + Pf1N1B4_3483 0.43 +2.2
3,890,309 + Pf1N1B4_3483 0.43 +1.2
3,890,309 + Pf1N1B4_3483 0.43 +0.5
3,890,310 - Pf1N1B4_3483 0.43 +0.6
3,890,475 - Pf1N1B4_3483 0.67 +1.0
3,890,495 + Pf1N1B4_3483 0.70 +1.8
3,890,495 + Pf1N1B4_3483 0.70 +0.7
3,890,496 - Pf1N1B4_3483 0.71 +0.5
3,890,496 - Pf1N1B4_3483 0.71 +2.1
3,890,938 + Pf1N1B4_3484 0.18 -1.2
3,890,938 + Pf1N1B4_3484 0.18 -3.2
3,890,939 - Pf1N1B4_3484 0.18 -0.4
3,890,944 + Pf1N1B4_3484 0.19 -0.8
3,890,944 + Pf1N1B4_3484 0.19 -2.0
3,890,944 + Pf1N1B4_3484 0.19 +0.8
3,890,944 + Pf1N1B4_3484 0.19 +1.0
3,890,944 + Pf1N1B4_3484 0.19 -0.4
3,890,944 + Pf1N1B4_3484 0.19 -1.8
3,890,944 + Pf1N1B4_3484 0.19 +1.0
3,890,944 + Pf1N1B4_3484 0.19 +1.7
3,890,944 + Pf1N1B4_3484 0.19 -0.2
3,890,945 - Pf1N1B4_3484 0.19 +0.5
3,891,004 + Pf1N1B4_3484 0.23 -0.0
3,891,004 + Pf1N1B4_3484 0.23 -0.1
3,891,079 + Pf1N1B4_3484 0.29 -3.1
3,891,079 + Pf1N1B4_3484 0.29 -2.4
3,891,079 + Pf1N1B4_3484 0.29 -1.1

Or see this region's nucleotide sequence