Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2019

Experiment: nitrogen source nitrite 0.1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.1mM
2,304,106	+		Pf1N1B4_2018	0.39	+0.1
2,304,106	+		Pf1N1B4_2018	0.39	+1.3
2,304,106	+		Pf1N1B4_2018	0.39	+0.9
2,304,106	+		Pf1N1B4_2018	0.39	+0.6
2,304,106	+		Pf1N1B4_2018	0.39	+1.4
2,304,106	+		Pf1N1B4_2018	0.39	-0.1
2,304,106	+		Pf1N1B4_2018	0.39	-1.4
2,304,107	-		Pf1N1B4_2018	0.39	-0.7
2,304,107	-		Pf1N1B4_2018	0.39	-2.4
2,304,107	-		Pf1N1B4_2018	0.39	-0.8
2,304,107	-		Pf1N1B4_2018	0.39	-0.0
2,304,107	-		Pf1N1B4_2018	0.39	-0.0
2,304,358	+		Pf1N1B4_2018	0.55	+0.8
2,304,358	+		Pf1N1B4_2018	0.55	-0.3
2,304,358	+				-0.7
2,304,358	+		Pf1N1B4_2018	0.55	-1.0
2,304,358	+				+0.1
2,304,358	+		Pf1N1B4_2018	0.55	-1.1
2,304,358	+		Pf1N1B4_2018	0.55	-1.6
2,304,359	-		Pf1N1B4_2018	0.55	-1.8
2,304,359	-		Pf1N1B4_2018	0.55	-0.8
2,304,469	+		Pf1N1B4_2018	0.63	-1.2
2,304,469	+		Pf1N1B4_2018	0.63	+1.6
2,304,469	+		Pf1N1B4_2018	0.63	+0.5
2,304,469	+		Pf1N1B4_2018	0.63	-0.4
2,304,470	-		Pf1N1B4_2018	0.63	+0.6
2,304,470	-		Pf1N1B4_2018	0.63	-1.2
2,304,470	-		Pf1N1B4_2018	0.63	-1.3
2,304,544	+		Pf1N1B4_2018	0.67	-0.5
2,304,544	+		Pf1N1B4_2018	0.67	+1.1
2,304,544	+		Pf1N1B4_2018	0.67	-0.9
2,304,544	+		Pf1N1B4_2018	0.67	+0.3
2,304,544	+		Pf1N1B4_2018	0.67	-0.6
2,304,544	+		Pf1N1B4_2018	0.67	-1.5
2,304,544	+		Pf1N1B4_2018	0.67	+1.1
2,304,544	+		Pf1N1B4_2018	0.67	+0.6
2,304,544	+		Pf1N1B4_2018	0.67	+1.4
2,304,544	+		Pf1N1B4_2018	0.67	+0.3
2,304,545	-		Pf1N1B4_2018	0.67	-1.6
2,304,545	-		Pf1N1B4_2018	0.67	+1.4
2,304,545	-		Pf1N1B4_2018	0.67	-0.9
2,304,545	-		Pf1N1B4_2018	0.67	-0.6
2,304,545	-		Pf1N1B4_2018	0.67	-1.2
2,304,545	-		Pf1N1B4_2018	0.67	+2.6
2,304,581	+		Pf1N1B4_2018	0.70	-0.3
2,304,581	+		Pf1N1B4_2018	0.70	+0.6
2,304,582	-		Pf1N1B4_2018	0.70	-0.2
2,304,582	-		Pf1N1B4_2018	0.70	-0.9
2,304,582	-		Pf1N1B4_2018	0.70	+1.2
2,304,650	+		Pf1N1B4_2018	0.74	-0.4
2,304,650	+		Pf1N1B4_2018	0.74	+3.3
2,304,651	-		Pf1N1B4_2018	0.74	-1.4
2,304,720	+		Pf1N1B4_2018	0.79	-1.3
2,304,729	+		Pf1N1B4_2018	0.79	+1.4
2,304,729	+		Pf1N1B4_2018	0.79	-0.5
2,304,730	-		Pf1N1B4_2018	0.79	-2.5
2,304,756	+		Pf1N1B4_2018	0.81	+0.8
2,304,756	+		Pf1N1B4_2018	0.81	+0.5
2,304,802	-		Pf1N1B4_2018	0.84	+1.8
2,304,840	-		Pf1N1B4_2018	0.86	-1.4
2,304,840	-		Pf1N1B4_2018	0.86	-2.3
2,304,923	-				-1.2
2,305,142	+				-1.9
2,305,142	+				+1.6
2,305,142	+				-1.9
2,305,143	-				-0.0
2,305,143	-				-0.2
2,305,143	-				+0.3
2,305,143	-				-1.6
2,305,143	-				+0.0
2,305,143	-				-2.1
2,305,143	-				-2.5
2,305,143	-				+0.8
2,305,286	+		Pf1N1B4_2019	0.20	-0.4
2,305,286	+		Pf1N1B4_2019	0.20	-1.0
2,305,286	+		Pf1N1B4_2019	0.20	-0.1
2,305,286	+		Pf1N1B4_2019	0.20	+0.0
2,305,287	-		Pf1N1B4_2019	0.20	-1.0
2,305,287	-		Pf1N1B4_2019	0.20	-1.7
2,305,287	-		Pf1N1B4_2019	0.20	+0.7
2,305,287	-		Pf1N1B4_2019	0.20	+1.1
2,305,287	-		Pf1N1B4_2019	0.20	-0.9
2,305,287	-		Pf1N1B4_2019	0.20	-0.2
2,305,301	+		Pf1N1B4_2019	0.21	-1.9
2,305,301	+		Pf1N1B4_2019	0.21	+0.8
2,305,302	-				+0.1
2,305,302	-		Pf1N1B4_2019	0.21	-1.9
2,305,302	-		Pf1N1B4_2019	0.21	-2.4
2,305,302	-		Pf1N1B4_2019	0.21	+1.3
2,305,302	-		Pf1N1B4_2019	0.21	+0.6
2,305,493	+		Pf1N1B4_2019	0.39	+2.1
2,305,493	+		Pf1N1B4_2019	0.39	+1.5
2,305,493	+		Pf1N1B4_2019	0.39	-3.8
2,305,493	+		Pf1N1B4_2019	0.39	-0.8
2,305,493	+		Pf1N1B4_2019	0.39	+0.4
2,305,493	+		Pf1N1B4_2019	0.39	-2.4
2,305,493	+		Pf1N1B4_2019	0.39	-1.9
2,305,493	+		Pf1N1B4_2019	0.39	-1.3
2,305,493	+		Pf1N1B4_2019	0.39	-1.3
2,305,494	-		Pf1N1B4_2019	0.39	-0.1
2,305,494	-		Pf1N1B4_2019	0.39	-1.2
2,305,494	-		Pf1N1B4_2019	0.39	-2.5
2,305,494	-		Pf1N1B4_2019	0.39	-0.7
2,305,511	+		Pf1N1B4_2019	0.40	+0.4
2,305,511	+		Pf1N1B4_2019	0.40	-0.4
2,305,511	+		Pf1N1B4_2019	0.40	+0.7
2,305,511	+		Pf1N1B4_2019	0.40	-0.9
2,305,512	-		Pf1N1B4_2019	0.41	-2.0
2,305,512	-		Pf1N1B4_2019	0.41	+0.4
2,305,512	-		Pf1N1B4_2019	0.41	-1.2
2,305,512	-		Pf1N1B4_2019	0.41	-0.7
2,305,512	-		Pf1N1B4_2019	0.41	+0.4
2,305,520	+		Pf1N1B4_2019	0.41	-0.4
2,305,520	+		Pf1N1B4_2019	0.41	+2.0
2,305,520	+		Pf1N1B4_2019	0.41	+1.4
2,305,520	+		Pf1N1B4_2019	0.41	+0.2
2,305,521	-		Pf1N1B4_2019	0.41	-0.9
2,305,521	-		Pf1N1B4_2019	0.41	-1.0
2,305,521	-		Pf1N1B4_2019	0.41	-1.2
2,305,521	-		Pf1N1B4_2019	0.41	-0.1
2,305,559	+		Pf1N1B4_2019	0.45	-0.4
2,305,772	+		Pf1N1B4_2019	0.64	-2.2
2,305,772	+		Pf1N1B4_2019	0.64	-1.3
2,305,773	-		Pf1N1B4_2019	0.64	+0.6
2,305,773	-		Pf1N1B4_2019	0.64	-0.9
2,305,773	-		Pf1N1B4_2019	0.64	-1.8
2,305,778	+		Pf1N1B4_2019	0.65	-1.9
2,305,778	+		Pf1N1B4_2019	0.65	+0.3
2,305,779	-		Pf1N1B4_2019	0.65	-2.4
2,305,779	-		Pf1N1B4_2019	0.65	-0.8
2,305,779	-		Pf1N1B4_2019	0.65	+0.8
2,305,779	-		Pf1N1B4_2019	0.65	-0.5
2,305,779	-		Pf1N1B4_2019	0.65	+0.7
2,305,779	-		Pf1N1B4_2019	0.65	-2.4
2,305,779	-		Pf1N1B4_2019	0.65	-0.0
2,305,779	-		Pf1N1B4_2019	0.65	+0.9
2,306,001	-		Pf1N1B4_2019	0.85	+0.2
2,306,060	+				-0.7
2,306,060	+				-0.4
2,306,060	+				+1.0
2,306,060	+				-2.1
2,306,060	+				-0.2
2,306,060	+				-0.9
2,306,060	+				+0.2
2,306,061	-				+2.6
2,306,075	+				+1.2
2,306,075	+				+0.7
2,306,075	+				+1.0
2,306,076	-				+0.4
2,306,076	-				+0.1
2,306,119	+				+0.6
2,306,119	+				-2.0
2,306,129	+				+0.0
2,306,130	-				+0.2
2,306,130	-				-0.0
2,306,130	-				+1.4
2,306,131	+				-1.0
2,306,131	+				+1.8
2,306,132	-				-0.3
2,306,145	+				+0.6
2,306,146	-				-1.9
2,306,172	+				-0.2
2,306,172	+				+0.4
2,306,173	-				-1.9
2,306,173	-				+0.4
2,306,236	+				+0.8
2,306,236	+				+0.6
2,306,310	-		Pf1N1B4_2020	0.13	+0.8
2,306,358	+		Pf1N1B4_2020	0.17	-1.4
2,306,358	+		Pf1N1B4_2020	0.17	+1.1
2,306,358	+		Pf1N1B4_2020	0.17	+0.2
2,306,358	+		Pf1N1B4_2020	0.17	+0.6
2,306,359	-		Pf1N1B4_2020	0.17	+0.1
2,306,397	-		Pf1N1B4_2020	0.21	-0.3
2,306,472	-		Pf1N1B4_2020	0.28	-1.8
2,306,472	-		Pf1N1B4_2020	0.28	+0.4
2,306,472	-		Pf1N1B4_2020	0.28	+2.0
2,306,472	-		Pf1N1B4_2020	0.28	+2.7
2,306,591	+		Pf1N1B4_2020	0.40	-1.7
2,306,592	-		Pf1N1B4_2020	0.40	+1.4
2,306,592	-		Pf1N1B4_2020	0.40	+1.1
2,306,624	+		Pf1N1B4_2020	0.43	+0.6
2,306,702	+		Pf1N1B4_2020	0.51	-0.9
2,306,702	+		Pf1N1B4_2020	0.51	-2.5
2,306,702	+		Pf1N1B4_2020	0.51	+1.2
2,306,702	+		Pf1N1B4_2020	0.51	+0.1
2,306,703	-		Pf1N1B4_2020	0.51	-1.4
2,306,825	+		Pf1N1B4_2020	0.63	+0.9
2,306,826	-		Pf1N1B4_2020	0.63	-0.8
2,306,876	+		Pf1N1B4_2020	0.68	+3.6
2,306,876	+		Pf1N1B4_2020	0.68	-0.3
2,306,877	-		Pf1N1B4_2020	0.68	+0.2
2,306,877	-		Pf1N1B4_2020	0.68	-0.3
2,306,877	-		Pf1N1B4_2020	0.68	-0.2
2,306,879	+		Pf1N1B4_2020	0.68	+0.9
2,306,879	+		Pf1N1B4_2020	0.68	+0.5
2,306,879	+		Pf1N1B4_2020	0.68	-0.8
2,306,880	-		Pf1N1B4_2020	0.68	-1.8
2,306,942	+		Pf1N1B4_2020	0.74	-0.6
2,306,942	+		Pf1N1B4_2020	0.74	-0.7
2,307,012	-		Pf1N1B4_2020	0.81	+0.6
2,307,012	-		Pf1N1B4_2020	0.81	-2.7
2,307,091	+		Pf1N1B4_2020	0.88	-1.9
2,307,091	+		Pf1N1B4_2020	0.88	+0.6
2,307,091	+		Pf1N1B4_2020	0.88	+1.7
2,307,092	-		Pf1N1B4_2020	0.88	+0.4