Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5169 and Pf1N1B4_187 are separated by 690 nucleotides Pf1N1B4_187 and Pf1N1B4_188 are separated by 168 nucleotides Pf1N1B4_188 and Pf1N1B4_189 are separated by 98 nucleotides
Pf1N1B4_5169 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 234,243 to 235,773
_5169
Pf1N1B4_187 - Threonine and homoserine efflux system, at 236,464 to 237,351
_187
Pf1N1B4_188 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 237,520 to 237,801
_188
Pf1N1B4_189 - Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein, at 237,900 to 238,640
_189
Position (kb) 236
237
238 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 235.698 kb on - strand at 235.698 kb on - strand at 235.704 kb on - strand at 235.734 kb on - strand at 236.374 kb on + strand at 236.374 kb on + strand at 236.374 kb on + strand at 236.374 kb on + strand at 236.374 kb on + strand at 236.374 kb on + strand at 236.374 kb on + strand at 236.374 kb on + strand at 236.374 kb on + strand at 236.374 kb on + strand at 236.375 kb on - strand at 236.375 kb on - strand at 236.375 kb on - strand at 236.375 kb on - strand at 236.375 kb on - strand at 236.375 kb on - strand at 236.375 kb on - strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.376 kb on + strand at 236.377 kb on - strand at 236.377 kb on - strand at 236.377 kb on - strand at 236.377 kb on - strand at 236.377 kb on - strand at 236.378 kb on + strand at 236.378 kb on + strand at 236.378 kb on + strand at 236.378 kb on + strand at 236.378 kb on + strand at 236.378 kb on + strand at 236.378 kb on + strand at 236.379 kb on - strand at 236.379 kb on - strand at 236.381 kb on - strand at 236.406 kb on + strand at 236.427 kb on + strand at 236.427 kb on + strand at 236.427 kb on + strand at 236.427 kb on + strand at 236.427 kb on + strand at 236.428 kb on - strand at 236.428 kb on - strand at 236.428 kb on - strand at 236.428 kb on - strand at 236.443 kb on + strand at 236.444 kb on - strand at 236.444 kb on - strand at 236.640 kb on - strand, within Pf1N1B4_187 at 236.731 kb on + strand, within Pf1N1B4_187 at 236.731 kb on + strand at 236.731 kb on + strand, within Pf1N1B4_187 at 236.731 kb on + strand, within Pf1N1B4_187 at 236.731 kb on + strand at 236.731 kb on + strand, within Pf1N1B4_187 at 236.731 kb on + strand, within Pf1N1B4_187 at 236.731 kb on + strand, within Pf1N1B4_187 at 236.732 kb on - strand, within Pf1N1B4_187 at 236.732 kb on - strand, within Pf1N1B4_187 at 236.732 kb on - strand, within Pf1N1B4_187 at 236.732 kb on - strand, within Pf1N1B4_187 at 236.732 kb on - strand, within Pf1N1B4_187 at 236.732 kb on - strand, within Pf1N1B4_187 at 236.732 kb on - strand, within Pf1N1B4_187 at 236.732 kb on - strand, within Pf1N1B4_187 at 236.732 kb on - strand, within Pf1N1B4_187 at 236.733 kb on + strand, within Pf1N1B4_187 at 236.733 kb on + strand, within Pf1N1B4_187 at 236.733 kb on + strand, within Pf1N1B4_187 at 236.733 kb on + strand, within Pf1N1B4_187 at 236.734 kb on - strand, within Pf1N1B4_187 at 236.734 kb on - strand, within Pf1N1B4_187 at 236.734 kb on - strand at 236.734 kb on - strand, within Pf1N1B4_187 at 236.734 kb on - strand, within Pf1N1B4_187 at 236.734 kb on - strand, within Pf1N1B4_187 at 236.734 kb on - strand, within Pf1N1B4_187 at 236.734 kb on - strand, within Pf1N1B4_187 at 236.734 kb on - strand, within Pf1N1B4_187 at 236.803 kb on - strand, within Pf1N1B4_187 at 236.806 kb on + strand, within Pf1N1B4_187 at 236.806 kb on + strand, within Pf1N1B4_187 at 236.862 kb on - strand, within Pf1N1B4_187 at 236.867 kb on + strand, within Pf1N1B4_187 at 236.868 kb on - strand, within Pf1N1B4_187 at 236.953 kb on + strand, within Pf1N1B4_187 at 236.953 kb on + strand, within Pf1N1B4_187 at 236.953 kb on + strand, within Pf1N1B4_187 at 236.953 kb on + strand, within Pf1N1B4_187 at 236.953 kb on + strand, within Pf1N1B4_187 at 236.954 kb on - strand, within Pf1N1B4_187 at 236.954 kb on - strand, within Pf1N1B4_187 at 236.954 kb on - strand, within Pf1N1B4_187 at 237.035 kb on + strand, within Pf1N1B4_187 at 237.036 kb on - strand, within Pf1N1B4_187 at 237.133 kb on + strand, within Pf1N1B4_187 at 237.165 kb on - strand, within Pf1N1B4_187 at 237.244 kb on + strand, within Pf1N1B4_187 at 237.244 kb on + strand, within Pf1N1B4_187 at 237.244 kb on + strand, within Pf1N1B4_187 at 237.245 kb on - strand, within Pf1N1B4_187 at 237.321 kb on + strand at 237.321 kb on + strand at 237.374 kb on + strand at 237.389 kb on + strand at 237.390 kb on - strand at 237.390 kb on - strand at 237.409 kb on + strand at 237.409 kb on + strand at 237.409 kb on + strand at 237.409 kb on + strand at 237.616 kb on - strand, within Pf1N1B4_188 at 237.655 kb on + strand, within Pf1N1B4_188 at 237.691 kb on + strand, within Pf1N1B4_188 at 237.691 kb on + strand, within Pf1N1B4_188 at 237.800 kb on - strand at 237.996 kb on + strand, within Pf1N1B4_189 at 237.997 kb on - strand, within Pf1N1B4_189 at 237.997 kb on - strand, within Pf1N1B4_189 at 237.999 kb on - strand, within Pf1N1B4_189 at 238.225 kb on - strand, within Pf1N1B4_189
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 235,698 - -1.3 235,698 - -0.6 235,704 - +0.2 235,734 - +1.2 236,374 + +1.3 236,374 + +1.6 236,374 + +0.5 236,374 + +0.4 236,374 + -0.7 236,374 + -2.5 236,374 + -0.3 236,374 + -0.3 236,374 + +0.3 236,374 + +0.6 236,375 - +1.1 236,375 - +0.0 236,375 - -0.2 236,375 - -0.3 236,375 - +1.6 236,375 - -0.4 236,375 - -0.3 236,376 + +0.3 236,376 + +0.8 236,376 + +0.5 236,376 + -0.1 236,376 + +0.2 236,376 + +1.5 236,376 + -0.3 236,376 + +0.2 236,376 + +0.8 236,376 + -2.1 236,376 + -0.1 236,376 + -2.9 236,376 + +1.4 236,376 + -2.0 236,377 - -0.5 236,377 - +0.1 236,377 - +0.4 236,377 - -0.0 236,377 - +1.0 236,378 + +1.7 236,378 + -0.7 236,378 + +0.4 236,378 + +0.0 236,378 + -1.4 236,378 + -0.7 236,378 + -0.9 236,379 - -1.8 236,379 - -1.6 236,381 - -0.3 236,406 + +0.9 236,427 + +1.5 236,427 + -1.8 236,427 + +0.1 236,427 + +1.7 236,427 + -2.0 236,428 - -1.8 236,428 - +0.8 236,428 - +1.0 236,428 - -1.0 236,443 + -0.6 236,444 - +1.7 236,444 - +0.7 236,640 - Pf1N1B4_187 0.20 +0.9 236,731 + Pf1N1B4_187 0.30 +1.4 236,731 + -2.0 236,731 + Pf1N1B4_187 0.30 +2.1 236,731 + Pf1N1B4_187 0.30 -1.3 236,731 + +0.9 236,731 + Pf1N1B4_187 0.30 +2.3 236,731 + Pf1N1B4_187 0.30 +1.8 236,731 + Pf1N1B4_187 0.30 +2.3 236,732 - Pf1N1B4_187 0.30 +2.2 236,732 - Pf1N1B4_187 0.30 -0.4 236,732 - Pf1N1B4_187 0.30 +0.6 236,732 - Pf1N1B4_187 0.30 +0.2 236,732 - Pf1N1B4_187 0.30 +0.2 236,732 - Pf1N1B4_187 0.30 +0.6 236,732 - Pf1N1B4_187 0.30 +0.4 236,732 - Pf1N1B4_187 0.30 -0.4 236,732 - Pf1N1B4_187 0.30 +1.4 236,733 + Pf1N1B4_187 0.30 -2.0 236,733 + Pf1N1B4_187 0.30 +2.7 236,733 + Pf1N1B4_187 0.30 +1.2 236,733 + Pf1N1B4_187 0.30 -0.5 236,734 - Pf1N1B4_187 0.30 -0.0 236,734 - Pf1N1B4_187 0.30 +0.5 236,734 - -0.8 236,734 - Pf1N1B4_187 0.30 -1.8 236,734 - Pf1N1B4_187 0.30 +3.1 236,734 - Pf1N1B4_187 0.30 +0.9 236,734 - Pf1N1B4_187 0.30 +2.1 236,734 - Pf1N1B4_187 0.30 +0.1 236,734 - Pf1N1B4_187 0.30 -2.3 236,803 - Pf1N1B4_187 0.38 +1.4 236,806 + Pf1N1B4_187 0.39 -1.5 236,806 + Pf1N1B4_187 0.39 -1.7 236,862 - Pf1N1B4_187 0.45 -1.4 236,867 + Pf1N1B4_187 0.45 +2.3 236,868 - Pf1N1B4_187 0.45 +1.4 236,953 + Pf1N1B4_187 0.55 +0.6 236,953 + Pf1N1B4_187 0.55 +1.8 236,953 + Pf1N1B4_187 0.55 +0.2 236,953 + Pf1N1B4_187 0.55 +2.6 236,953 + Pf1N1B4_187 0.55 +1.8 236,954 - Pf1N1B4_187 0.55 +1.5 236,954 - Pf1N1B4_187 0.55 +0.7 236,954 - Pf1N1B4_187 0.55 -0.6 237,035 + Pf1N1B4_187 0.64 +1.2 237,036 - Pf1N1B4_187 0.64 -1.9 237,133 + Pf1N1B4_187 0.75 +1.6 237,165 - Pf1N1B4_187 0.79 +1.4 237,244 + Pf1N1B4_187 0.88 +0.7 237,244 + Pf1N1B4_187 0.88 -1.3 237,244 + Pf1N1B4_187 0.88 +0.9 237,245 - Pf1N1B4_187 0.88 +0.9 237,321 + +1.2 237,321 + -0.3 237,374 + +0.0 237,389 + +0.8 237,390 - -2.5 237,390 - +0.2 237,409 + -1.0 237,409 + +0.2 237,409 + -0.6 237,409 + -2.5 237,616 - Pf1N1B4_188 0.34 +0.3 237,655 + Pf1N1B4_188 0.48 +0.7 237,691 + Pf1N1B4_188 0.61 +0.0 237,691 + Pf1N1B4_188 0.61 +2.1 237,800 - +0.2 237,996 + Pf1N1B4_189 0.13 +2.4 237,997 - Pf1N1B4_189 0.13 -0.1 237,997 - Pf1N1B4_189 0.13 -0.5 237,999 - Pf1N1B4_189 0.13 -1.2 238,225 - Pf1N1B4_189 0.44 +1.2
Or see this region's nucleotide sequence