Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_119

Experiment: nitrogen source nitrite 0.1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_117 and Pf1N1B4_118 are separated by 40 nucleotidesPf1N1B4_118 and Pf1N1B4_119 are separated by 277 nucleotidesPf1N1B4_119 and Pf1N1B4_120 are separated by 92 nucleotides Pf1N1B4_117 - Iron siderophore sensor protein, at 123,814 to 124,788 _117 Pf1N1B4_118 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily, at 124,829 to 125,329 _118 Pf1N1B4_119 - Putative haemolysin/cytolysin secreted via TPS pathway, at 125,607 to 130,118 _119 Pf1N1B4_120 - Channel-forming transporter/cytolysins activator of TpsB family, at 130,211 to 131,938 _120 Position (kb) 125 126 127 128 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.839 kb on - strandat 124.839 kb on - strandat 124.839 kb on - strandat 124.883 kb on - strandat 124.883 kb on - strand, within Pf1N1B4_118at 124.883 kb on - strand, within Pf1N1B4_118at 124.884 kb on + strand, within Pf1N1B4_118at 124.884 kb on + strand, within Pf1N1B4_118at 124.884 kb on + strand, within Pf1N1B4_118at 124.885 kb on - strand, within Pf1N1B4_118at 124.885 kb on - strand, within Pf1N1B4_118at 124.885 kb on - strandat 125.406 kb on + strandat 125.406 kb on + strandat 125.407 kb on - strandat 125.407 kb on - strandat 125.437 kb on + strandat 125.441 kb on + strandat 125.441 kb on + strandat 125.441 kb on + strandat 125.442 kb on - strandat 125.456 kb on + strandat 125.456 kb on + strandat 125.456 kb on + strandat 125.457 kb on - strandat 125.478 kb on + strandat 125.484 kb on + strandat 125.608 kb on + strandat 125.608 kb on + strandat 125.608 kb on + strandat 125.608 kb on + strandat 125.608 kb on + strandat 125.609 kb on - strandat 125.609 kb on - strandat 125.609 kb on - strandat 125.609 kb on - strandat 125.609 kb on - strandat 125.720 kb on + strandat 125.974 kb on + strandat 125.974 kb on + strandat 126.238 kb on + strand, within Pf1N1B4_119at 126.239 kb on - strand, within Pf1N1B4_119at 126.397 kb on + strand, within Pf1N1B4_119at 126.789 kb on - strandat 126.789 kb on - strand, within Pf1N1B4_119at 127.107 kb on - strand, within Pf1N1B4_119at 127.565 kb on + strand, within Pf1N1B4_119at 127.565 kb on + strandat 127.565 kb on + strand, within Pf1N1B4_119at 127.566 kb on - strand, within Pf1N1B4_119at 127.566 kb on - strand, within Pf1N1B4_119at 127.566 kb on - strand, within Pf1N1B4_119at 127.566 kb on - strandat 127.566 kb on - strand, within Pf1N1B4_119at 127.680 kb on + strand, within Pf1N1B4_119at 127.680 kb on + strand, within Pf1N1B4_119at 127.680 kb on + strand, within Pf1N1B4_119at 127.680 kb on + strand, within Pf1N1B4_119at 127.680 kb on + strand, within Pf1N1B4_119at 127.681 kb on - strand, within Pf1N1B4_119at 127.801 kb on + strandat 127.801 kb on + strand, within Pf1N1B4_119at 127.801 kb on + strand, within Pf1N1B4_119at 127.802 kb on - strand, within Pf1N1B4_119at 127.804 kb on + strand, within Pf1N1B4_119at 128.083 kb on + strand, within Pf1N1B4_119at 129.286 kb on - strand, within Pf1N1B4_119at 129.703 kb on + strandat 129.703 kb on + strandat 129.704 kb on - strandat 129.704 kb on - strandat 129.704 kb on - strandat 129.704 kb on - strandat 129.704 kb on - strandat 129.892 kb on + strandat 129.893 kb on - strandat 129.893 kb on - strandat 130.134 kb on - strandat 130.291 kb on - strandat 130.456 kb on + strandat 130.569 kb on + strand, within Pf1N1B4_120at 130.650 kb on + strand, within Pf1N1B4_120at 130.734 kb on + strand, within Pf1N1B4_120at 130.843 kb on - strand, within Pf1N1B4_120at 131.020 kb on - strand, within Pf1N1B4_120at 131.047 kb on - strand, within Pf1N1B4_120at 131.050 kb on - strand, within Pf1N1B4_120

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM
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124,839 - -1.4
124,839 - -0.0
124,839 - +0.3
124,883 - -0.9
124,883 - Pf1N1B4_118 0.11 +1.0
124,883 - Pf1N1B4_118 0.11 +1.0
124,884 + Pf1N1B4_118 0.11 -0.1
124,884 + Pf1N1B4_118 0.11 -0.7
124,884 + Pf1N1B4_118 0.11 +2.2
124,885 - Pf1N1B4_118 0.11 +0.4
124,885 - Pf1N1B4_118 0.11 -2.0
124,885 - +0.3
125,406 + -0.7
125,406 + +1.6
125,407 - +0.4
125,407 - +0.1
125,437 + -0.9
125,441 + +0.5
125,441 + +1.0
125,441 + +0.6
125,442 - -2.0
125,456 + -1.9
125,456 + -3.3
125,456 + +1.3
125,457 - -0.3
125,478 + -2.2
125,484 + -1.8
125,608 + +0.3
125,608 + -2.0
125,608 + +1.7
125,608 + +0.3
125,608 + -1.8
125,609 - -0.0
125,609 - +0.5
125,609 - -1.0
125,609 - +0.6
125,609 - -1.6
125,720 + +0.5
125,974 + +1.0
125,974 + +0.0
126,238 + Pf1N1B4_119 0.14 +1.1
126,239 - Pf1N1B4_119 0.14 +0.7
126,397 + Pf1N1B4_119 0.18 +1.0
126,789 - +2.1
126,789 - Pf1N1B4_119 0.26 +2.7
127,107 - Pf1N1B4_119 0.33 -1.4
127,565 + Pf1N1B4_119 0.43 +0.7
127,565 + +0.3
127,565 + Pf1N1B4_119 0.43 +1.0
127,566 - Pf1N1B4_119 0.43 +0.1
127,566 - Pf1N1B4_119 0.43 -1.9
127,566 - Pf1N1B4_119 0.43 +1.1
127,566 - +2.7
127,566 - Pf1N1B4_119 0.43 -0.3
127,680 + Pf1N1B4_119 0.46 +2.7
127,680 + Pf1N1B4_119 0.46 +0.4
127,680 + Pf1N1B4_119 0.46 +2.0
127,680 + Pf1N1B4_119 0.46 -2.0
127,680 + Pf1N1B4_119 0.46 +1.2
127,681 - Pf1N1B4_119 0.46 +0.7
127,801 + -0.7
127,801 + Pf1N1B4_119 0.49 +1.4
127,801 + Pf1N1B4_119 0.49 +0.6
127,802 - Pf1N1B4_119 0.49 -2.2
127,804 + Pf1N1B4_119 0.49 -0.2
128,083 + Pf1N1B4_119 0.55 +1.1
129,286 - Pf1N1B4_119 0.82 +2.2
129,703 + -0.7
129,703 + -1.7
129,704 - +1.4
129,704 - -1.9
129,704 - -1.6
129,704 - +0.3
129,704 - -1.5
129,892 + -0.3
129,893 - -1.9
129,893 - -0.7
130,134 - +1.1
130,291 - +1.4
130,456 + -1.6
130,569 + Pf1N1B4_120 0.21 +0.7
130,650 + Pf1N1B4_120 0.25 +0.1
130,734 + Pf1N1B4_120 0.30 +0.6
130,843 - Pf1N1B4_120 0.37 +1.3
131,020 - Pf1N1B4_120 0.47 -0.7
131,047 - Pf1N1B4_120 0.48 +2.0
131,050 - Pf1N1B4_120 0.49 +0.1

Or see this region's nucleotide sequence