Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24880 and PGA1_c24890 overlap by 4 nucleotides PGA1_c24890 and PGA1_c24900 are separated by 102 nucleotides PGA1_c24900 and PGA1_c24910 are separated by 49 nucleotides PGA1_c24910 and PGA1_c24920 are separated by 183 nucleotides
PGA1_c24880: PGA1_c24880 - Metal-dependent hydrolase involved in phosphonate metabolism, at 2,592,032 to 2,593,180
_c24880
PGA1_c24890: PGA1_c24890 - hypothetical protein, at 2,593,177 to 2,593,995
_c24890
PGA1_c24900: PGA1_c24900 - Predicted permease, DMT superfamily, at 2,594,098 to 2,594,979
_c24900
PGA1_c24910: PGA1_c24910 - Predicted acetyltransferase, at 2,595,029 to 2,595,631
_c24910
PGA1_c24920: PGA1_c24920 - 60 kDa chaperonin, at 2,595,815 to 2,597,467
_c24920
Position (kb)
2594
2595 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2593.111 kb on - strand at 2593.111 kb on - strand at 2593.128 kb on - strand at 2593.144 kb on + strand at 2593.144 kb on + strand at 2593.147 kb on - strand at 2593.152 kb on - strand at 2593.175 kb on + strand at 2593.183 kb on - strand at 2593.193 kb on + strand at 2593.214 kb on + strand at 2593.217 kb on + strand at 2593.233 kb on - strand at 2593.237 kb on + strand at 2593.241 kb on + strand at 2593.298 kb on + strand, within PGA1_c24890 at 2593.330 kb on - strand, within PGA1_c24890 at 2593.337 kb on - strand, within PGA1_c24890 at 2593.363 kb on + strand, within PGA1_c24890 at 2593.376 kb on - strand, within PGA1_c24890 at 2593.395 kb on + strand, within PGA1_c24890 at 2593.536 kb on - strand, within PGA1_c24890 at 2593.536 kb on - strand, within PGA1_c24890 at 2593.536 kb on - strand, within PGA1_c24890 at 2593.608 kb on + strand, within PGA1_c24890 at 2593.643 kb on + strand, within PGA1_c24890 at 2593.749 kb on - strand, within PGA1_c24890 at 2593.749 kb on - strand, within PGA1_c24890 at 2593.749 kb on - strand, within PGA1_c24890 at 2593.749 kb on - strand, within PGA1_c24890 at 2593.749 kb on - strand, within PGA1_c24890 at 2593.809 kb on - strand, within PGA1_c24890 at 2593.836 kb on + strand, within PGA1_c24890 at 2593.844 kb on - strand, within PGA1_c24890 at 2593.844 kb on - strand, within PGA1_c24890 at 2593.889 kb on - strand, within PGA1_c24890 at 2593.906 kb on + strand, within PGA1_c24890 at 2593.930 kb on + strand at 2593.930 kb on + strand at 2593.930 kb on + strand at 2593.938 kb on - strand at 2593.938 kb on - strand at 2593.963 kb on + strand at 2593.966 kb on - strand at 2593.976 kb on - strand at 2593.976 kb on - strand at 2594.019 kb on + strand at 2594.027 kb on - strand at 2594.076 kb on - strand at 2594.078 kb on - strand at 2594.078 kb on - strand at 2594.085 kb on - strand at 2594.095 kb on - strand at 2594.173 kb on + strand at 2594.181 kb on - strand at 2594.202 kb on + strand, within PGA1_c24900 at 2594.218 kb on - strand, within PGA1_c24900 at 2594.245 kb on - strand, within PGA1_c24900 at 2594.318 kb on - strand, within PGA1_c24900 at 2594.334 kb on + strand, within PGA1_c24900 at 2594.334 kb on + strand, within PGA1_c24900 at 2594.356 kb on - strand, within PGA1_c24900 at 2594.356 kb on - strand, within PGA1_c24900 at 2594.361 kb on - strand, within PGA1_c24900 at 2594.399 kb on + strand, within PGA1_c24900 at 2594.399 kb on + strand, within PGA1_c24900 at 2594.399 kb on + strand, within PGA1_c24900 at 2594.407 kb on - strand, within PGA1_c24900 at 2594.526 kb on - strand, within PGA1_c24900 at 2594.604 kb on + strand, within PGA1_c24900 at 2594.705 kb on - strand, within PGA1_c24900 at 2594.715 kb on - strand, within PGA1_c24900 at 2594.879 kb on - strand, within PGA1_c24900 at 2594.904 kb on - strand at 2594.927 kb on - strand at 2595.051 kb on + strand at 2595.122 kb on - strand, within PGA1_c24910 at 2595.131 kb on - strand, within PGA1_c24910 at 2595.182 kb on + strand, within PGA1_c24910 at 2595.198 kb on + strand, within PGA1_c24910 at 2595.198 kb on + strand, within PGA1_c24910 at 2595.254 kb on + strand, within PGA1_c24910 at 2595.262 kb on - strand, within PGA1_c24910 at 2595.262 kb on - strand, within PGA1_c24910 at 2595.270 kb on - strand, within PGA1_c24910 at 2595.270 kb on - strand, within PGA1_c24910 at 2595.288 kb on - strand, within PGA1_c24910 at 2595.348 kb on - strand, within PGA1_c24910 at 2595.392 kb on + strand, within PGA1_c24910 at 2595.398 kb on + strand, within PGA1_c24910 at 2595.400 kb on - strand, within PGA1_c24910 at 2595.456 kb on + strand, within PGA1_c24910 at 2595.464 kb on - strand, within PGA1_c24910 at 2595.489 kb on + strand, within PGA1_c24910 at 2595.628 kb on + strand at 2595.707 kb on + strand at 2595.715 kb on - strand at 2595.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,593,111 - +1.2 2,593,111 - -0.4 2,593,128 - -3.7 2,593,144 + +0.6 2,593,144 + +1.7 2,593,147 - +0.8 2,593,152 - -0.5 2,593,175 + -0.9 2,593,183 - +0.3 2,593,193 + +0.4 2,593,214 + -2.2 2,593,217 + +0.8 2,593,233 - +2.4 2,593,237 + -0.5 2,593,241 + +1.0 2,593,298 + PGA1_c24890 0.15 +0.6 2,593,330 - PGA1_c24890 0.19 -0.3 2,593,337 - PGA1_c24890 0.20 -0.3 2,593,363 + PGA1_c24890 0.23 +1.3 2,593,376 - PGA1_c24890 0.24 +0.6 2,593,395 + PGA1_c24890 0.27 -0.2 2,593,536 - PGA1_c24890 0.44 +0.3 2,593,536 - PGA1_c24890 0.44 -0.2 2,593,536 - PGA1_c24890 0.44 +0.7 2,593,608 + PGA1_c24890 0.53 +1.0 2,593,643 + PGA1_c24890 0.57 -0.1 2,593,749 - PGA1_c24890 0.70 +0.1 2,593,749 - PGA1_c24890 0.70 -0.7 2,593,749 - PGA1_c24890 0.70 +1.8 2,593,749 - PGA1_c24890 0.70 +1.0 2,593,749 - PGA1_c24890 0.70 -2.3 2,593,809 - PGA1_c24890 0.77 -1.2 2,593,836 + PGA1_c24890 0.80 -0.5 2,593,844 - PGA1_c24890 0.81 -2.1 2,593,844 - PGA1_c24890 0.81 +0.9 2,593,889 - PGA1_c24890 0.87 -1.6 2,593,906 + PGA1_c24890 0.89 -0.0 2,593,930 + -2.6 2,593,930 + +0.1 2,593,930 + -0.4 2,593,938 - +0.4 2,593,938 - -0.9 2,593,963 + -0.1 2,593,966 - -1.0 2,593,976 - -0.1 2,593,976 - -1.2 2,594,019 + +0.1 2,594,027 - +0.1 2,594,076 - +0.2 2,594,078 - +0.3 2,594,078 - +0.6 2,594,085 - +1.6 2,594,095 - +0.4 2,594,173 + +1.6 2,594,181 - -0.4 2,594,202 + PGA1_c24900 0.12 +1.5 2,594,218 - PGA1_c24900 0.14 +0.2 2,594,245 - PGA1_c24900 0.17 +1.3 2,594,318 - PGA1_c24900 0.25 +0.7 2,594,334 + PGA1_c24900 0.27 +0.1 2,594,334 + PGA1_c24900 0.27 +0.6 2,594,356 - PGA1_c24900 0.29 +0.4 2,594,356 - PGA1_c24900 0.29 +1.0 2,594,361 - PGA1_c24900 0.30 +0.1 2,594,399 + PGA1_c24900 0.34 -1.6 2,594,399 + PGA1_c24900 0.34 +0.6 2,594,399 + PGA1_c24900 0.34 +0.6 2,594,407 - PGA1_c24900 0.35 -1.2 2,594,526 - PGA1_c24900 0.49 +0.3 2,594,604 + PGA1_c24900 0.57 +1.7 2,594,705 - PGA1_c24900 0.69 -0.8 2,594,715 - PGA1_c24900 0.70 -3.3 2,594,879 - PGA1_c24900 0.89 +0.4 2,594,904 - -0.5 2,594,927 - -0.7 2,595,051 + +0.1 2,595,122 - PGA1_c24910 0.15 +0.6 2,595,131 - PGA1_c24910 0.17 +0.7 2,595,182 + PGA1_c24910 0.25 -1.4 2,595,198 + PGA1_c24910 0.28 +1.8 2,595,198 + PGA1_c24910 0.28 +0.4 2,595,254 + PGA1_c24910 0.37 -0.2 2,595,262 - PGA1_c24910 0.39 -0.0 2,595,262 - PGA1_c24910 0.39 -0.4 2,595,270 - PGA1_c24910 0.40 -1.4 2,595,270 - PGA1_c24910 0.40 -0.9 2,595,288 - PGA1_c24910 0.43 -0.2 2,595,348 - PGA1_c24910 0.53 -0.8 2,595,392 + PGA1_c24910 0.60 +3.4 2,595,398 + PGA1_c24910 0.61 +0.0 2,595,400 - PGA1_c24910 0.62 -0.3 2,595,456 + PGA1_c24910 0.71 +1.6 2,595,464 - PGA1_c24910 0.72 -0.2 2,595,489 + PGA1_c24910 0.76 -0.4 2,595,628 + -0.4 2,595,707 + +0.7 2,595,715 - -0.9 2,595,715 - -0.5
Or see this region's nucleotide sequence