Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS24095 and RALBFv3_RS15945 are separated by 99 nucleotides RALBFv3_RS15945 and RALBFv3_RS24100 are separated by 394 nucleotides RALBFv3_RS24100 and RALBFv3_RS24105 are separated by 97 nucleotides
RALBFv3_RS24095: RALBFv3_RS24095 - type I toxin-antitoxin system SymE family toxin, at 12,382 to 12,615
_RS24095
RALBFv3_RS15945: RALBFv3_RS15945 - XRE family transcriptional regulator, at 12,715 to 13,125
_RS15945
RALBFv3_RS24100: RALBFv3_RS24100 - tail completion-like protein, at 13,520 to 13,705
_RS24100
RALBFv3_RS24105: RALBFv3_RS24105 - hypothetical protein, at 13,803 to 14,759
_RS24105
RALBFv3_RS24110: RALBFv3_RS24110 - hypothetical protein, at 14,674 to 14,895
_RS24110
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.037 kb on - strand, within RALBFv3_RS15945 at 13.285 kb on + strand at 13.285 kb on + strand at 13.505 kb on + strand at 13.505 kb on + strand at 13.517 kb on + strand at 13.517 kb on + strand at 13.517 kb on + strand at 13.517 kb on + strand at 13.517 kb on + strand at 13.517 kb on + strand at 13.517 kb on + strand at 13.532 kb on + strand at 13.532 kb on + strand at 13.587 kb on - strand, within RALBFv3_RS24100 at 13.587 kb on - strand, within RALBFv3_RS24100 at 13.587 kb on - strand, within RALBFv3_RS24100 at 13.587 kb on - strand, within RALBFv3_RS24100 at 13.587 kb on - strand, within RALBFv3_RS24100 at 13.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days remove 13,037 - RALBFv3_RS15945 0.78 +0.7 13,285 + +0.9 13,285 + -2.2 13,505 + +1.0 13,505 + +0.7 13,517 + -0.5 13,517 + -0.2 13,517 + +2.6 13,517 + +1.2 13,517 + +2.4 13,517 + -0.5 13,517 + +0.3 13,532 + +1.6 13,532 + -0.3 13,587 - RALBFv3_RS24100 0.36 +1.4 13,587 - RALBFv3_RS24100 0.36 +0.9 13,587 - RALBFv3_RS24100 0.36 +2.0 13,587 - RALBFv3_RS24100 0.36 +0.0 13,587 - RALBFv3_RS24100 0.36 -0.8 13,759 - -0.6
Or see this region's nucleotide sequence