Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS17910

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS17900 and RALBFv3_RS17905 are separated by 25 nucleotidesRALBFv3_RS17905 and RALBFv3_RS17910 overlap by 1 nucleotidesRALBFv3_RS17910 and RALBFv3_RS17915 are separated by 0 nucleotides RALBFv3_RS17900: RALBFv3_RS17900 - DoxX family protein, at 522,616 to 523,038 _RS17900 RALBFv3_RS17905: RALBFv3_RS17905 - GTP cyclohydrolase II RibA, at 523,064 to 523,720 _RS17905 RALBFv3_RS17910: RALBFv3_RS17910 - hypothetical protein, at 523,720 to 523,959 _RS17910 RALBFv3_RS17915: RALBFv3_RS17915 - type III effector protein, at 523,960 to 526,056 _RS17915 Position (kb) 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 522.837 kb on + strand, within RALBFv3_RS17900at 522.837 kb on + strand, within RALBFv3_RS17900at 522.837 kb on + strand, within RALBFv3_RS17900at 522.960 kb on - strand, within RALBFv3_RS17900at 522.960 kb on - strand, within RALBFv3_RS17900at 522.969 kb on + strand, within RALBFv3_RS17900at 522.969 kb on + strand, within RALBFv3_RS17900at 522.970 kb on - strand, within RALBFv3_RS17900at 523.175 kb on + strand, within RALBFv3_RS17905at 523.176 kb on - strand, within RALBFv3_RS17905at 523.176 kb on - strand, within RALBFv3_RS17905at 523.176 kb on - strand, within RALBFv3_RS17905at 523.176 kb on - strand, within RALBFv3_RS17905at 523.177 kb on - strandat 523.361 kb on + strand, within RALBFv3_RS17905at 523.362 kb on - strand, within RALBFv3_RS17905at 523.370 kb on + strand, within RALBFv3_RS17905at 523.370 kb on + strand, within RALBFv3_RS17905at 523.370 kb on + strand, within RALBFv3_RS17905at 523.370 kb on + strand, within RALBFv3_RS17905at 523.403 kb on + strand, within RALBFv3_RS17905at 523.404 kb on - strand, within RALBFv3_RS17905at 523.496 kb on + strand, within RALBFv3_RS17905at 523.497 kb on - strand, within RALBFv3_RS17905at 523.801 kb on + strand, within RALBFv3_RS17910at 523.801 kb on + strand, within RALBFv3_RS17910at 523.801 kb on + strand, within RALBFv3_RS17910at 523.802 kb on - strand, within RALBFv3_RS17910at 523.865 kb on + strand, within RALBFv3_RS17910at 523.865 kb on + strand, within RALBFv3_RS17910at 523.865 kb on + strand, within RALBFv3_RS17910at 523.865 kb on + strand, within RALBFv3_RS17910at 523.866 kb on - strand, within RALBFv3_RS17910at 523.866 kb on - strand, within RALBFv3_RS17910at 523.866 kb on - strand, within RALBFv3_RS17910at 523.903 kb on + strand, within RALBFv3_RS17910at 523.903 kb on + strand, within RALBFv3_RS17910at 523.904 kb on - strand, within RALBFv3_RS17910at 523.904 kb on - strand, within RALBFv3_RS17910at 523.904 kb on - strand, within RALBFv3_RS17910at 523.904 kb on - strand, within RALBFv3_RS17910at 524.138 kb on + strandat 524.138 kb on + strandat 524.139 kb on - strandat 524.543 kb on + strand, within RALBFv3_RS17915at 524.544 kb on - strand, within RALBFv3_RS17915at 524.594 kb on + strand, within RALBFv3_RS17915at 524.594 kb on + strand, within RALBFv3_RS17915at 524.594 kb on + strand, within RALBFv3_RS17915at 524.595 kb on - strand, within RALBFv3_RS17915at 524.595 kb on - strand, within RALBFv3_RS17915at 524.735 kb on + strand, within RALBFv3_RS17915

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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522,837 + RALBFv3_RS17900 0.52 -0.6
522,837 + RALBFv3_RS17900 0.52 +0.6
522,837 + RALBFv3_RS17900 0.52 -0.5
522,960 - RALBFv3_RS17900 0.81 -0.7
522,960 - RALBFv3_RS17900 0.81 +1.1
522,969 + RALBFv3_RS17900 0.83 -0.2
522,969 + RALBFv3_RS17900 0.83 +0.3
522,970 - RALBFv3_RS17900 0.84 -1.0
523,175 + RALBFv3_RS17905 0.17 +1.4
523,176 - RALBFv3_RS17905 0.17 -3.2
523,176 - RALBFv3_RS17905 0.17 -0.3
523,176 - RALBFv3_RS17905 0.17 -0.8
523,176 - RALBFv3_RS17905 0.17 -0.9
523,177 - +2.2
523,361 + RALBFv3_RS17905 0.45 +0.6
523,362 - RALBFv3_RS17905 0.45 +1.4
523,370 + RALBFv3_RS17905 0.47 -2.7
523,370 + RALBFv3_RS17905 0.47 +0.9
523,370 + RALBFv3_RS17905 0.47 -1.4
523,370 + RALBFv3_RS17905 0.47 -0.4
523,403 + RALBFv3_RS17905 0.52 -0.6
523,404 - RALBFv3_RS17905 0.52 -1.8
523,496 + RALBFv3_RS17905 0.66 -0.4
523,497 - RALBFv3_RS17905 0.66 -1.3
523,801 + RALBFv3_RS17910 0.34 +0.6
523,801 + RALBFv3_RS17910 0.34 +0.0
523,801 + RALBFv3_RS17910 0.34 -0.4
523,802 - RALBFv3_RS17910 0.34 -0.7
523,865 + RALBFv3_RS17910 0.60 -1.1
523,865 + RALBFv3_RS17910 0.60 +0.6
523,865 + RALBFv3_RS17910 0.60 +0.6
523,865 + RALBFv3_RS17910 0.60 +1.6
523,866 - RALBFv3_RS17910 0.61 -0.4
523,866 - RALBFv3_RS17910 0.61 +0.1
523,866 - RALBFv3_RS17910 0.61 +1.4
523,903 + RALBFv3_RS17910 0.76 -0.0
523,903 + RALBFv3_RS17910 0.76 -1.4
523,904 - RALBFv3_RS17910 0.77 -0.3
523,904 - RALBFv3_RS17910 0.77 -0.8
523,904 - RALBFv3_RS17910 0.77 -1.2
523,904 - RALBFv3_RS17910 0.77 -0.2
524,138 + +0.2
524,138 + -0.2
524,139 - -2.0
524,543 + RALBFv3_RS17915 0.28 +2.0
524,544 - RALBFv3_RS17915 0.28 -0.0
524,594 + RALBFv3_RS17915 0.30 +0.4
524,594 + RALBFv3_RS17915 0.30 +0.3
524,594 + RALBFv3_RS17915 0.30 -0.4
524,595 - RALBFv3_RS17915 0.30 -0.3
524,595 - RALBFv3_RS17915 0.30 -0.3
524,735 + RALBFv3_RS17915 0.37 -0.8

Or see this region's nucleotide sequence