Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS14545

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS14530 and RALBFv3_RS14535 are separated by 137 nucleotidesRALBFv3_RS14535 and RALBFv3_RS14540 are separated by 53 nucleotidesRALBFv3_RS14540 and RALBFv3_RS14545 are separated by 96 nucleotidesRALBFv3_RS14545 and RALBFv3_RS14550 are separated by 809 nucleotides RALBFv3_RS14530: RALBFv3_RS14530 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,173,279 to 3,173,854 _RS14530 RALBFv3_RS14535: RALBFv3_RS14535 - tRNA-Gly, at 3,173,992 to 3,174,067 _RS14535 RALBFv3_RS14540: RALBFv3_RS14540 - tRNA-Gly, at 3,174,121 to 3,174,196 _RS14540 RALBFv3_RS14545: RALBFv3_RS14545 - tRNA-Cys, at 3,174,293 to 3,174,366 _RS14545 RALBFv3_RS14550: RALBFv3_RS14550 - DNA-binding response regulator, at 3,175,176 to 3,175,889 _RS14550 Position (kb) 3174 3175Strain fitness (log2 ratio) -1 0 1 2at 3174.476 kb on + strandat 3174.815 kb on + strandat 3174.816 kb on - strandat 3174.816 kb on - strandat 3174.818 kb on - strandat 3174.926 kb on - strandat 3175.183 kb on + strandat 3175.184 kb on - strandat 3175.187 kb on + strandat 3175.187 kb on + strandat 3175.187 kb on + strandat 3175.187 kb on + strandat 3175.187 kb on + strandat 3175.188 kb on - strandat 3175.189 kb on - strandat 3175.198 kb on + strandat 3175.311 kb on - strand, within RALBFv3_RS14550at 3175.311 kb on - strand, within RALBFv3_RS14550at 3175.311 kb on - strand, within RALBFv3_RS14550

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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3,174,476 + -0.2
3,174,815 + +2.2
3,174,816 - +0.6
3,174,816 - +0.3
3,174,818 - -0.3
3,174,926 - -0.4
3,175,183 + -0.6
3,175,184 - +1.6
3,175,187 + +1.1
3,175,187 + -0.4
3,175,187 + +0.1
3,175,187 + -1.0
3,175,187 + -0.6
3,175,188 - +0.6
3,175,189 - +0.6
3,175,198 + -0.2
3,175,311 - RALBFv3_RS14550 0.19 -0.4
3,175,311 - RALBFv3_RS14550 0.19 +0.1
3,175,311 - RALBFv3_RS14550 0.19 -0.1

Or see this region's nucleotide sequence