Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS14530 and RALBFv3_RS14535 are separated by 137 nucleotides RALBFv3_RS14535 and RALBFv3_RS14540 are separated by 53 nucleotides RALBFv3_RS14540 and RALBFv3_RS14545 are separated by 96 nucleotides RALBFv3_RS14545 and RALBFv3_RS14550 are separated by 809 nucleotides
RALBFv3_RS14530: RALBFv3_RS14530 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,173,279 to 3,173,854
_RS14530
RALBFv3_RS14535: RALBFv3_RS14535 - tRNA-Gly, at 3,173,992 to 3,174,067
_RS14535
RALBFv3_RS14540: RALBFv3_RS14540 - tRNA-Gly, at 3,174,121 to 3,174,196
_RS14540
RALBFv3_RS14545: RALBFv3_RS14545 - tRNA-Cys, at 3,174,293 to 3,174,366
_RS14545
RALBFv3_RS14550: RALBFv3_RS14550 - DNA-binding response regulator, at 3,175,176 to 3,175,889
_RS14550
Position (kb)
3174
3175 Strain fitness (log2 ratio)
-1
0
1
2 at 3174.476 kb on + strand at 3174.815 kb on + strand at 3174.816 kb on - strand at 3174.816 kb on - strand at 3174.818 kb on - strand at 3174.926 kb on - strand at 3175.183 kb on + strand at 3175.184 kb on - strand at 3175.187 kb on + strand at 3175.187 kb on + strand at 3175.187 kb on + strand at 3175.187 kb on + strand at 3175.187 kb on + strand at 3175.188 kb on - strand at 3175.189 kb on - strand at 3175.198 kb on + strand at 3175.311 kb on - strand, within RALBFv3_RS14550 at 3175.311 kb on - strand, within RALBFv3_RS14550 at 3175.311 kb on - strand, within RALBFv3_RS14550
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days remove 3,174,476 + -0.2 3,174,815 + +2.2 3,174,816 - +0.6 3,174,816 - +0.3 3,174,818 - -0.3 3,174,926 - -0.4 3,175,183 + -0.6 3,175,184 - +1.6 3,175,187 + +1.1 3,175,187 + -0.4 3,175,187 + +0.1 3,175,187 + -1.0 3,175,187 + -0.6 3,175,188 - +0.6 3,175,189 - +0.6 3,175,198 + -0.2 3,175,311 - RALBFv3_RS14550 0.19 -0.4 3,175,311 - RALBFv3_RS14550 0.19 +0.1 3,175,311 - RALBFv3_RS14550 0.19 -0.1
Or see this region's nucleotide sequence