Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS12070

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
2,663,172	-				-0.0
2,663,172	-				+3.6
2,663,172	-				+0.5
2,663,206	-				-0.1
2,663,206	-				-0.4
2,663,249	+				-0.1
2,663,249	+				-1.2
2,663,249	+				-0.0
2,663,249	+				+0.5
2,663,249	+				-0.1
2,663,249	+				-1.1
2,663,249	+				-0.9
2,663,249	+				-0.6
2,663,249	+				-0.3
2,663,250	-				-0.4
2,663,250	-				-0.4
2,663,250	-				-0.0
2,663,250	-				-0.9
2,663,250	-				-0.2
2,663,250	-				-0.4
2,663,250	-				+1.3
2,663,306	+				+0.3
2,663,306	+				+0.0
2,663,306	+				-1.2
2,663,306	+				-0.5
2,663,306	+				-0.5
2,663,307	-				+0.9
2,663,323	+				-0.2
2,663,324	-				-0.5
2,663,324	-				-0.3
2,663,324	-				-1.1
2,663,533	+		RALBFv3_RS12065	0.35	+0.1
2,663,534	-		RALBFv3_RS12065	0.35	-0.2
2,663,534	-		RALBFv3_RS12065	0.35	+0.1
2,663,534	-		RALBFv3_RS12065	0.35	-0.0
2,663,534	-		RALBFv3_RS12065	0.35	-0.7
2,663,534	-		RALBFv3_RS12065	0.35	-2.1
2,663,580	+		RALBFv3_RS12065	0.44	-0.7
2,663,580	+		RALBFv3_RS12065	0.44	+2.0
2,663,580	+		RALBFv3_RS12065	0.44	+0.2
2,663,580	+		RALBFv3_RS12065	0.44	+1.9
2,663,580	+		RALBFv3_RS12065	0.44	+1.6
2,663,580	+		RALBFv3_RS12065	0.44	+0.0
2,663,581	-		RALBFv3_RS12065	0.44	-0.1
2,663,581	-		RALBFv3_RS12065	0.44	-0.8
2,663,581	-		RALBFv3_RS12065	0.44	+1.2
2,663,581	-		RALBFv3_RS12065	0.44	-0.3
2,663,581	-		RALBFv3_RS12065	0.44	+0.2
2,663,622	+		RALBFv3_RS12065	0.52	-1.6
2,663,622	+		RALBFv3_RS12065	0.52	-0.5
2,663,622	+		RALBFv3_RS12065	0.52	+1.3
2,663,622	+		RALBFv3_RS12065	0.52	+0.0
2,663,622	+		RALBFv3_RS12065	0.52	-0.1
2,663,622	+		RALBFv3_RS12065	0.52	-0.6
2,663,623	-		RALBFv3_RS12065	0.52	+0.8
2,663,623	-		RALBFv3_RS12065	0.52	+0.2
2,663,623	-		RALBFv3_RS12065	0.52	+0.4
2,663,623	-		RALBFv3_RS12065	0.52	-0.2
2,663,645	+		RALBFv3_RS12065	0.57	+0.1
2,663,645	+		RALBFv3_RS12065	0.57	+0.4
2,663,646	-		RALBFv3_RS12065	0.57	+0.4
2,663,730	-		RALBFv3_RS12065	0.73	-0.3
2,663,783	+		RALBFv3_RS12065	0.84	-0.6
2,663,783	+		RALBFv3_RS12065	0.84	-0.6
2,663,783	+		RALBFv3_RS12065	0.84	-0.2
2,663,783	+		RALBFv3_RS12065	0.84	-0.5
2,663,783	+		RALBFv3_RS12065	0.84	+0.5
2,663,783	+		RALBFv3_RS12065	0.84	-0.6
2,663,783	+		RALBFv3_RS12065	0.84	+0.3
2,663,783	+		RALBFv3_RS12065	0.84	-0.7
2,663,783	+		RALBFv3_RS12065	0.84	-1.2
2,663,783	+		RALBFv3_RS12065	0.84	-0.5
2,663,783	+		RALBFv3_RS12065	0.84	-1.0
2,663,783	+		RALBFv3_RS12065	0.84	-0.1
2,663,784	-		RALBFv3_RS12065	0.84	+0.2
2,663,784	-		RALBFv3_RS12065	0.84	-0.2
2,663,836	-				+0.0
2,663,843	+				-2.7
2,663,844	-				-0.6
2,663,844	-				-1.5
2,663,904	+				-1.9
2,663,904	+				+1.5
2,663,910	-				+0.4
2,663,980	+				+1.7
2,663,981	-				-0.6
2,663,981	-				-0.4
2,663,981	-				-0.5
2,664,018	-				-0.4
2,664,019	-				+3.0
2,664,019	-				+0.5
2,664,019	-				+0.2
2,664,020	+				+0.2
2,664,020	+				+0.2
2,664,021	-				-0.3
2,664,021	-				-1.5
2,664,034	-				-0.2
2,664,049	+				-0.6
2,664,102	-				-0.7
2,664,106	+				-0.2
2,664,106	+				-0.0
2,664,106	+				-0.5
2,664,106	+				+1.5
2,664,106	+				+0.3
2,664,107	-				+0.3
2,664,115	+				+0.6
2,664,115	+				-0.1
2,664,115	+				-0.1
2,664,115	+				-1.3
2,664,115	+				+0.2
2,664,115	+				+0.1
2,664,116	-				-1.5
2,664,116	-				-0.6
2,664,116	-				-0.1
2,664,116	-				-1.5
2,664,116	-				-0.4
2,664,118	+				-0.1
2,664,119	-				-0.6
2,664,119	-				-1.7
2,664,119	-				-0.7
2,664,167	+		RALBFv3_RS12070	0.21	+1.5
2,664,167	+		RALBFv3_RS12070	0.21	+0.9
2,664,167	+		RALBFv3_RS12070	0.21	-0.5
2,664,179	+		RALBFv3_RS12070	0.24	+1.1
2,664,328	+		RALBFv3_RS12070	0.62	+0.5
2,664,328	+		RALBFv3_RS12070	0.62	-0.4
2,664,329	-		RALBFv3_RS12070	0.62	+0.3
2,664,329	-		RALBFv3_RS12070	0.62	-0.5
2,664,329	-		RALBFv3_RS12070	0.62	+0.1
2,664,329	-		RALBFv3_RS12070	0.62	+0.2
2,664,329	-		RALBFv3_RS12070	0.62	+0.3
2,664,329	-		RALBFv3_RS12070	0.62	+1.7
2,664,329	-		RALBFv3_RS12070	0.62	-0.7
2,664,329	-		RALBFv3_RS12070	0.62	+1.4
2,664,329	-		RALBFv3_RS12070	0.62	+0.7
2,664,393	+		RALBFv3_RS12070	0.79	+0.5
2,664,393	+		RALBFv3_RS12070	0.79	-0.6
2,664,393	+		RALBFv3_RS12070	0.79	-0.2
2,664,393	+		RALBFv3_RS12070	0.79	-0.5
2,664,393	+		RALBFv3_RS12070	0.79	+0.2
2,664,393	+		RALBFv3_RS12070	0.79	-0.1
2,664,394	-		RALBFv3_RS12070	0.79	+0.3
2,664,394	-		RALBFv3_RS12070	0.79	-0.2
2,664,394	-		RALBFv3_RS12070	0.79	+0.5
2,664,472	+				-0.1
2,664,472	+				+2.5
2,664,473	-				-0.9
2,664,473	-				+0.4
2,664,473	-				+0.8
2,664,540	+				+0.4
2,664,584	-				-0.1
2,664,584	-				-0.1
2,664,628	+				+1.3
2,664,628	+				-0.4
2,664,628	+				-0.3
2,664,628	+				+0.5
2,664,629	-				-0.3
2,664,629	-				+0.1
2,664,629	-				+0.1
2,664,638	+				+0.0
2,664,638	+				+0.5
2,664,638	+				+0.1
2,664,638	+				-0.8
2,664,638	+				-0.1
2,664,638	+				-0.4
2,664,639	-				-0.5
2,664,671	-				-0.0
2,664,671	-				+0.2
2,664,671	-				-0.3
2,664,673	+				-0.8
2,664,673	+				-0.7
2,664,673	+				+0.5
2,664,673	+				+3.3
2,664,674	-				+0.1
2,664,674	-				+0.0
2,664,674	-				+0.1
2,664,674	-				+0.1
2,664,674	-				+0.3
2,664,674	-				+0.4
2,664,674	-				-0.5
2,664,674	-				+0.0
2,664,709	-				+0.5
2,664,777	+		RALBFv3_RS12075	0.38	+3.0
2,664,777	+		RALBFv3_RS12075	0.38	-0.1
2,664,777	+		RALBFv3_RS12075	0.38	-0.7
2,664,777	+		RALBFv3_RS12075	0.38	+1.0
2,664,777	+		RALBFv3_RS12075	0.38	+0.5
2,664,777	+		RALBFv3_RS12075	0.38	+0.0
2,664,777	+		RALBFv3_RS12075	0.38	-1.9
2,664,778	-		RALBFv3_RS12075	0.39	+0.1
2,664,778	-		RALBFv3_RS12075	0.39	-0.1
2,664,778	-		RALBFv3_RS12075	0.39	+1.3
2,664,778	-		RALBFv3_RS12075	0.39	-0.5
2,664,778	-		RALBFv3_RS12075	0.39	+0.9
2,664,778	-		RALBFv3_RS12075	0.39	-3.2
2,664,778	-		RALBFv3_RS12075	0.39	-0.6
2,664,778	-		RALBFv3_RS12075	0.39	+0.3
2,664,778	-		RALBFv3_RS12075	0.39	-0.2
2,664,832	+		RALBFv3_RS12075	0.66	-0.5
2,664,832	+		RALBFv3_RS12075	0.66	+0.6
2,664,832	+		RALBFv3_RS12075	0.66	+0.5
2,664,832	+		RALBFv3_RS12075	0.66	-1.5
2,664,832	+		RALBFv3_RS12075	0.66	-0.4
2,664,833	-		RALBFv3_RS12075	0.66	+1.5
2,664,833	-		RALBFv3_RS12075	0.66	-0.5
2,664,833	-		RALBFv3_RS12075	0.66	+0.0
2,664,881	+				-0.5
2,664,882	-				-0.7
2,664,882	-				+0.5
2,664,882	-				-0.7
2,664,898	+				+0.1
2,664,898	+				+0.6
2,664,899	-				+0.6
2,665,022	+		RALBFv3_RS23975	0.34	-1.5
2,665,022	+		RALBFv3_RS23975	0.34	+0.2
2,665,023	-		RALBFv3_RS23975	0.34	-1.7
2,665,023	-		RALBFv3_RS23975	0.34	+0.1
2,665,023	-		RALBFv3_RS23975	0.34	-0.2
2,665,070	+		RALBFv3_RS23975	0.47	+0.5
2,665,071	-		RALBFv3_RS23975	0.47	-0.4
2,665,071	-		RALBFv3_RS23975	0.47	-1.6
2,665,116	+		RALBFv3_RS23975	0.60	-0.0
2,665,116	+		RALBFv3_RS23975	0.60	+0.2
2,665,116	+		RALBFv3_RS23975	0.60	-0.7
2,665,116	+		RALBFv3_RS23975	0.60	-1.1
2,665,117	-		RALBFv3_RS23975	0.60	-1.5
2,665,117	-		RALBFv3_RS23975	0.60	-1.9
2,665,117	-		RALBFv3_RS23975	0.60	+0.7
2,665,117	-		RALBFv3_RS23975	0.60	-0.5
2,665,243	-				+0.2
2,665,254	+				-0.9
2,665,254	+				-0.2
2,665,254	+				-0.8
2,665,254	+				+0.3
2,665,254	+				-0.5
2,665,254	+				+0.0
2,665,254	+				-0.2
2,665,255	-				+1.5
2,665,255	-				+0.2
2,665,255	-				-0.3
2,665,325	-				-0.4
2,665,412	+				-0.5
2,665,412	+				-0.6
2,665,423	+				-0.5
2,665,458	-				+1.8
2,665,458	-				+0.1
2,665,467	-				-0.5