Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS08260

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS08255 and RALBFv3_RS08260 overlap by 1 nucleotidesRALBFv3_RS08260 and RALBFv3_RS08265 are separated by 13 nucleotidesRALBFv3_RS08265 and RALBFv3_RS08270 are separated by 115 nucleotides RALBFv3_RS08255: RALBFv3_RS08255 - terminase, at 1,833,329 to 1,835,308 _RS08255 RALBFv3_RS08260: RALBFv3_RS08260 - hypothetical protein, at 1,835,308 to 1,835,844 _RS08260 RALBFv3_RS08265: RALBFv3_RS08265 - hypothetical protein, at 1,835,858 to 1,836,208 _RS08265 RALBFv3_RS08270: RALBFv3_RS08270 - DUF3489 domain-containing protein, at 1,836,324 to 1,836,797 _RS08270 Position (kb) 1835 1836Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1834.389 kb on + strand, within RALBFv3_RS08255at 1834.390 kb on - strand, within RALBFv3_RS08255at 1834.515 kb on + strand, within RALBFv3_RS08255at 1834.515 kb on + strand, within RALBFv3_RS08255at 1834.516 kb on - strand, within RALBFv3_RS08255at 1834.516 kb on - strand, within RALBFv3_RS08255at 1834.516 kb on - strand, within RALBFv3_RS08255at 1835.032 kb on - strand, within RALBFv3_RS08255at 1835.301 kb on - strandat 1835.560 kb on + strand, within RALBFv3_RS08260at 1835.560 kb on + strand, within RALBFv3_RS08260at 1835.560 kb on + strand, within RALBFv3_RS08260at 1835.560 kb on + strand, within RALBFv3_RS08260at 1835.976 kb on + strand, within RALBFv3_RS08265at 1835.977 kb on - strand, within RALBFv3_RS08265at 1836.075 kb on - strand, within RALBFv3_RS08265at 1836.075 kb on - strand, within RALBFv3_RS08265at 1836.514 kb on - strand, within RALBFv3_RS08270

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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1,834,389 + RALBFv3_RS08255 0.54 +0.3
1,834,390 - RALBFv3_RS08255 0.54 +0.1
1,834,515 + RALBFv3_RS08255 0.60 -0.5
1,834,515 + RALBFv3_RS08255 0.60 -0.1
1,834,516 - RALBFv3_RS08255 0.60 -1.9
1,834,516 - RALBFv3_RS08255 0.60 -0.9
1,834,516 - RALBFv3_RS08255 0.60 +0.2
1,835,032 - RALBFv3_RS08255 0.86 +2.3
1,835,301 - -0.4
1,835,560 + RALBFv3_RS08260 0.47 -1.5
1,835,560 + RALBFv3_RS08260 0.47 -2.1
1,835,560 + RALBFv3_RS08260 0.47 -1.1
1,835,560 + RALBFv3_RS08260 0.47 +0.3
1,835,976 + RALBFv3_RS08265 0.34 -2.0
1,835,977 - RALBFv3_RS08265 0.34 -0.8
1,836,075 - RALBFv3_RS08265 0.62 +0.3
1,836,075 - RALBFv3_RS08265 0.62 +3.3
1,836,514 - RALBFv3_RS08270 0.40 -0.9

Or see this region's nucleotide sequence