Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02155

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02150 and RALBFv3_RS02155 are separated by 184 nucleotidesRALBFv3_RS02155 and RALBFv3_RS02160 are separated by 106 nucleotides RALBFv3_RS02150: RALBFv3_RS02150 - phosphate ABC transporter substrate-binding protein PstS, at 479,561 to 480,592 _RS02150 RALBFv3_RS02155: RALBFv3_RS02155 - phosphoglucosamine mutase, at 480,777 to 482,120 _RS02155 RALBFv3_RS02160: RALBFv3_RS02160 - dihydropteroate synthase, at 482,227 to 483,024 _RS02160 Position (kb) 480 481 482 483Strain fitness (log2 ratio) -1 0 1at 479.944 kb on - strand, within RALBFv3_RS02150at 480.219 kb on + strand, within RALBFv3_RS02150at 480.220 kb on - strand, within RALBFv3_RS02150at 480.432 kb on + strand, within RALBFv3_RS02150at 480.483 kb on + strand, within RALBFv3_RS02150at 480.645 kb on + strandat 480.763 kb on + strandat 480.764 kb on - strandat 483.105 kb on + strandat 483.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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479,944 - RALBFv3_RS02150 0.37 -1.1
480,219 + RALBFv3_RS02150 0.64 -0.6
480,220 - RALBFv3_RS02150 0.64 +0.5
480,432 + RALBFv3_RS02150 0.84 +0.8
480,483 + RALBFv3_RS02150 0.89 +1.2
480,645 + +0.3
480,763 + +0.3
480,764 - -1.1
483,105 + -0.6
483,106 - +0.6

Or see this region's nucleotide sequence