Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS00670

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS00665 and RALBFv3_RS00670 are separated by 24 nucleotidesRALBFv3_RS00670 and RALBFv3_RS00675 are separated by 101 nucleotides RALBFv3_RS00665: RALBFv3_RS00665 - membrane protein, at 147,804 to 149,345 _RS00665 RALBFv3_RS00670: RALBFv3_RS00670 - methyltransferase, at 149,370 to 150,092 _RS00670 RALBFv3_RS00675: RALBFv3_RS00675 - hypothetical protein, at 150,194 to 151,297 _RS00675 Position (kb) 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1at 149.621 kb on - strand, within RALBFv3_RS00670at 149.621 kb on - strand, within RALBFv3_RS00670at 149.621 kb on - strand, within RALBFv3_RS00670at 149.866 kb on + strand, within RALBFv3_RS00670at 149.866 kb on + strand, within RALBFv3_RS00670at 149.973 kb on - strand, within RALBFv3_RS00670at 150.148 kb on - strandat 150.195 kb on + strandat 150.202 kb on - strandat 150.265 kb on - strandat 150.265 kb on - strandat 150.327 kb on + strand, within RALBFv3_RS00675at 150.327 kb on + strand, within RALBFv3_RS00675at 150.328 kb on - strand, within RALBFv3_RS00675at 150.328 kb on - strand, within RALBFv3_RS00675at 150.328 kb on - strand, within RALBFv3_RS00675at 150.454 kb on - strand, within RALBFv3_RS00675at 150.454 kb on - strand, within RALBFv3_RS00675at 150.558 kb on + strand, within RALBFv3_RS00675at 150.819 kb on + strand, within RALBFv3_RS00675at 150.820 kb on - strand, within RALBFv3_RS00675at 150.820 kb on - strand, within RALBFv3_RS00675at 150.820 kb on - strand, within RALBFv3_RS00675at 150.826 kb on - strand, within RALBFv3_RS00675

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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149,621 - RALBFv3_RS00670 0.35 -1.2
149,621 - RALBFv3_RS00670 0.35 -1.2
149,621 - RALBFv3_RS00670 0.35 -1.1
149,866 + RALBFv3_RS00670 0.69 -3.2
149,866 + RALBFv3_RS00670 0.69 +0.6
149,973 - RALBFv3_RS00670 0.83 -1.7
150,148 - +0.5
150,195 + +0.0
150,202 - +0.2
150,265 - +0.0
150,265 - +1.4
150,327 + RALBFv3_RS00675 0.12 -0.1
150,327 + RALBFv3_RS00675 0.12 +0.3
150,328 - RALBFv3_RS00675 0.12 +1.4
150,328 - RALBFv3_RS00675 0.12 +0.5
150,328 - RALBFv3_RS00675 0.12 +0.2
150,454 - RALBFv3_RS00675 0.24 -0.5
150,454 - RALBFv3_RS00675 0.24 +0.7
150,558 + RALBFv3_RS00675 0.33 -0.7
150,819 + RALBFv3_RS00675 0.57 -0.3
150,820 - RALBFv3_RS00675 0.57 -1.2
150,820 - RALBFv3_RS00675 0.57 -0.2
150,820 - RALBFv3_RS00675 0.57 -1.4
150,826 - RALBFv3_RS00675 0.57 -0.2

Or see this region's nucleotide sequence