Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4595 and Psyr_4596 are separated by 18 nucleotides Psyr_4596 and Psyr_4597 overlap by 4 nucleotides Psyr_4597 and Psyr_4598 are separated by 45 nucleotides Psyr_4598 and Psyr_4599 overlap by 20 nucleotides Psyr_4599 and Psyr_4600 are separated by 122 nucleotides
Psyr_4595: Psyr_4595 - Bacteriophage Mu tail sheath, at 5,455,327 to 5,456,823
_4595
Psyr_4596: Psyr_4596 - conserved hypothetical protein, at 5,456,842 to 5,457,030
_4596
Psyr_4597: Psyr_4597 - conserved hypothetical protein, at 5,457,027 to 5,457,617
_4597
Psyr_4598: Psyr_4598 - lipoprotein, putative, at 5,457,663 to 5,458,001
_4598
Psyr_4599: Psyr_4599 - conserved hypothetical protein, at 5,457,982 to 5,458,371
_4599
Psyr_4600: Psyr_4600 - Glycoside hydrolase, family 5, at 5,458,494 to 5,459,666
_4600
Position (kb) 5457
5458
5459 Strain fitness (log2 ratio) -2
-1
0
1 at 5456.844 kb on - strand at 5456.886 kb on + strand, within Psyr_4596 at 5456.887 kb on - strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.011 kb on - strand, within Psyr_4596 at 5457.160 kb on + strand, within Psyr_4597 at 5457.160 kb on + strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.238 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.493 kb on + strand, within Psyr_4597 at 5457.672 kb on + strand at 5457.833 kb on - strand, within Psyr_4598 at 5457.833 kb on - strand, within Psyr_4598 at 5457.863 kb on + strand, within Psyr_4598 at 5457.863 kb on + strand, within Psyr_4598 at 5457.863 kb on + strand, within Psyr_4598 at 5457.864 kb on - strand, within Psyr_4598 at 5457.864 kb on - strand, within Psyr_4598 at 5458.053 kb on + strand, within Psyr_4599 at 5458.338 kb on + strand at 5458.338 kb on + strand at 5458.338 kb on + strand at 5458.339 kb on - strand at 5458.339 kb on - strand at 5458.354 kb on + strand at 5458.355 kb on - strand at 5458.507 kb on + strand at 5458.537 kb on + strand at 5458.537 kb on + strand at 5458.537 kb on + strand at 5458.537 kb on + strand at 5458.537 kb on + strand at 5458.538 kb on - strand at 5458.656 kb on - strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.748 kb on - strand, within Psyr_4600 at 5458.748 kb on - strand, within Psyr_4600 at 5458.809 kb on - strand, within Psyr_4600 at 5458.840 kb on + strand, within Psyr_4600
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM remove 5,456,844 - -0.5 5,456,886 + Psyr_4596 0.23 +0.4 5,456,887 - Psyr_4596 0.24 +0.0 5,457,010 + Psyr_4596 0.89 +0.5 5,457,010 + Psyr_4596 0.89 +0.1 5,457,010 + Psyr_4596 0.89 +0.1 5,457,010 + Psyr_4596 0.89 -0.8 5,457,011 - Psyr_4596 0.89 -0.0 5,457,160 + Psyr_4597 0.23 -0.5 5,457,160 + Psyr_4597 0.23 +0.4 5,457,161 - Psyr_4597 0.23 +0.5 5,457,161 - Psyr_4597 0.23 -1.9 5,457,161 - Psyr_4597 0.23 -0.1 5,457,161 - Psyr_4597 0.23 +1.1 5,457,161 - Psyr_4597 0.23 +0.3 5,457,238 + Psyr_4597 0.36 -0.8 5,457,283 + Psyr_4597 0.43 +0.4 5,457,283 + Psyr_4597 0.43 +0.3 5,457,283 + Psyr_4597 0.43 -0.2 5,457,283 + Psyr_4597 0.43 -0.1 5,457,493 + Psyr_4597 0.79 +0.5 5,457,672 + -0.0 5,457,833 - Psyr_4598 0.50 -0.3 5,457,833 - Psyr_4598 0.50 -1.7 5,457,863 + Psyr_4598 0.59 -0.1 5,457,863 + Psyr_4598 0.59 -0.4 5,457,863 + Psyr_4598 0.59 -0.8 5,457,864 - Psyr_4598 0.59 -1.1 5,457,864 - Psyr_4598 0.59 -0.1 5,458,053 + Psyr_4599 0.18 +0.5 5,458,338 + +0.6 5,458,338 + -0.8 5,458,338 + +0.4 5,458,339 - -0.4 5,458,339 - -1.1 5,458,354 + -0.2 5,458,355 - +0.2 5,458,507 + -0.4 5,458,537 + -0.5 5,458,537 + +0.7 5,458,537 + +1.5 5,458,537 + +0.6 5,458,537 + +0.6 5,458,538 - -0.3 5,458,656 - Psyr_4600 0.14 -0.7 5,458,747 + Psyr_4600 0.22 -0.1 5,458,747 + Psyr_4600 0.22 +1.1 5,458,747 + Psyr_4600 0.22 -0.0 5,458,747 + Psyr_4600 0.22 -0.5 5,458,747 + Psyr_4600 0.22 +0.2 5,458,748 - Psyr_4600 0.22 -1.0 5,458,748 - Psyr_4600 0.22 -0.9 5,458,809 - Psyr_4600 0.27 +1.3 5,458,840 + Psyr_4600 0.29 -0.8
Or see this region's nucleotide sequence