Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4562

Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4561 and Psyr_RNA66 are separated by 46 nucleotidesPsyr_RNA66 and Psyr_RNA67 are separated by 165 nucleotidesPsyr_RNA67 and Psyr_RNA68 are separated by 26 nucleotidesPsyr_RNA68 and Psyr_RNA69 are separated by 24 nucleotidesPsyr_RNA69 and Psyr_4562 are separated by 142 nucleotidesPsyr_4562 and Psyr_4563 are separated by 7 nucleotidesPsyr_4563 and Psyr_4564 overlap by 11 nucleotides Psyr_4561: Psyr_4561 - protein translocase subunit secE/sec61 gamma, at 5,419,660 to 5,420,028 _4561 Psyr_RNA66: Psyr_RNA66 - tRNA-Trp, at 5,420,075 to 5,420,150 _RNA66 Psyr_RNA67: Psyr_RNA67 - tRNA-Thr, at 5,420,316 to 5,420,391 _RNA67 Psyr_RNA68: Psyr_RNA68 - tRNA-Gly, at 5,420,418 to 5,420,491 _RNA68 Psyr_RNA69: Psyr_RNA69 - tRNA-Tyr, at 5,420,516 to 5,420,600 _RNA69 Psyr_4562: Psyr_4562 - conserved domain protein, at 5,420,743 to 5,421,171 _4562 Psyr_4563: Psyr_4563 - Bvg accessory factor, at 5,421,179 to 5,421,928 _4563 Psyr_4564: Psyr_4564 - Biotin--acetyl-CoA-carboxylase ligase, at 5,421,918 to 5,422,925 _4564 Position (kb) 5420 5421 5422Strain fitness (log2 ratio) -2 -1 0 1 2at 5420.061 kb on - strandat 5420.061 kb on - strandat 5420.061 kb on - strandat 5420.061 kb on - strandat 5420.061 kb on - strandat 5420.061 kb on - strandat 5420.061 kb on - strandat 5420.061 kb on - strandat 5420.061 kb on - strandat 5420.067 kb on - strandat 5420.067 kb on - strandat 5420.207 kb on - strandat 5420.278 kb on - strandat 5420.293 kb on - strandat 5420.293 kb on - strandat 5420.293 kb on - strandat 5420.301 kb on - strandat 5420.670 kb on - strandat 5420.670 kb on - strandat 5420.686 kb on - strandat 5420.736 kb on - strandat 5420.736 kb on - strandat 5420.736 kb on - strandat 5420.736 kb on - strandat 5420.736 kb on - strandat 5420.740 kb on - strandat 5420.740 kb on - strandat 5420.777 kb on - strandat 5420.777 kb on - strandat 5420.871 kb on - strand, within Psyr_4562at 5420.981 kb on + strand, within Psyr_4562at 5420.981 kb on + strand, within Psyr_4562at 5420.982 kb on - strand, within Psyr_4562at 5421.057 kb on + strand, within Psyr_4562at 5421.058 kb on - strand, within Psyr_4562at 5421.060 kb on + strand, within Psyr_4562at 5421.060 kb on + strand, within Psyr_4562at 5421.061 kb on - strand, within Psyr_4562at 5421.125 kb on + strand, within Psyr_4562at 5421.125 kb on + strand, within Psyr_4562at 5421.125 kb on + strand, within Psyr_4562at 5421.125 kb on + strand, within Psyr_4562at 5421.125 kb on + strand, within Psyr_4562at 5421.126 kb on - strand, within Psyr_4562at 5421.128 kb on + strand, within Psyr_4562at 5421.128 kb on + strand, within Psyr_4562at 5421.128 kb on + strand, within Psyr_4562at 5421.129 kb on - strandat 5421.138 kb on + strandat 5421.138 kb on + strandat 5421.160 kb on + strandat 5421.160 kb on + strandat 5421.161 kb on - strandat 5421.172 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
remove
5,420,061 - -0.1
5,420,061 - +0.8
5,420,061 - +1.1
5,420,061 - +1.9
5,420,061 - -0.0
5,420,061 - -0.1
5,420,061 - -1.3
5,420,061 - +0.8
5,420,061 - -0.4
5,420,067 - -0.4
5,420,067 - -0.7
5,420,207 - -1.1
5,420,278 - -0.9
5,420,293 - +0.2
5,420,293 - +0.4
5,420,293 - -0.3
5,420,301 - +0.0
5,420,670 - +0.3
5,420,670 - -0.4
5,420,686 - +0.1
5,420,736 - -0.1
5,420,736 - -0.3
5,420,736 - -0.1
5,420,736 - -0.7
5,420,736 - -1.8
5,420,740 - -1.1
5,420,740 - +0.9
5,420,777 - +1.1
5,420,777 - +1.0
5,420,871 - Psyr_4562 0.30 -0.3
5,420,981 + Psyr_4562 0.55 +0.5
5,420,981 + Psyr_4562 0.55 -0.5
5,420,982 - Psyr_4562 0.56 -1.0
5,421,057 + Psyr_4562 0.73 -2.6
5,421,058 - Psyr_4562 0.73 -0.6
5,421,060 + Psyr_4562 0.74 -1.5
5,421,060 + Psyr_4562 0.74 -0.2
5,421,061 - Psyr_4562 0.74 -0.2
5,421,125 + Psyr_4562 0.89 -1.4
5,421,125 + Psyr_4562 0.89 -0.2
5,421,125 + Psyr_4562 0.89 -0.7
5,421,125 + Psyr_4562 0.89 -0.9
5,421,125 + Psyr_4562 0.89 -0.2
5,421,126 - Psyr_4562 0.89 -0.7
5,421,128 + Psyr_4562 0.90 +2.1
5,421,128 + Psyr_4562 0.90 -0.8
5,421,128 + Psyr_4562 0.90 -1.9
5,421,129 - +0.2
5,421,138 + -2.2
5,421,138 + -1.0
5,421,160 + -0.7
5,421,160 + +1.1
5,421,161 - -0.4
5,421,172 - +1.3

Or see this region's nucleotide sequence