Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2366 and Psyr_2367 overlap by 4 nucleotides Psyr_2367 and Psyr_2368 are separated by 11 nucleotides Psyr_2368 and Psyr_2369 are separated by 50 nucleotides
Psyr_2366: Psyr_2366 - ABC transporter, at 2,744,227 to 2,744,973
_2366
Psyr_2367: Psyr_2367 - ABC-3, at 2,744,970 to 2,745,839
_2367
Psyr_2368: Psyr_2368 - Periplasmic solute binding protein, at 2,745,851 to 2,746,747
_2368
Psyr_2369: Psyr_2369 - aldose 1-epimerase, at 2,746,798 to 2,747,946
_2369
Position (kb)
2744
2745
2746 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2743.981 kb on + strand at 2743.981 kb on + strand at 2743.982 kb on - strand at 2744.076 kb on - strand at 2744.076 kb on - strand at 2744.081 kb on + strand at 2744.188 kb on - strand at 2744.285 kb on + strand at 2744.285 kb on + strand at 2744.286 kb on - strand at 2744.979 kb on + strand at 2744.979 kb on + strand at 2744.979 kb on + strand at 2744.980 kb on - strand at 2745.286 kb on - strand, within Psyr_2367 at 2745.286 kb on - strand, within Psyr_2367 at 2745.355 kb on + strand, within Psyr_2367 at 2745.355 kb on + strand, within Psyr_2367 at 2745.355 kb on + strand, within Psyr_2367 at 2745.356 kb on - strand, within Psyr_2367 at 2745.396 kb on + strand, within Psyr_2367 at 2745.396 kb on + strand, within Psyr_2367 at 2745.396 kb on + strand, within Psyr_2367 at 2745.396 kb on + strand, within Psyr_2367 at 2745.396 kb on + strand, within Psyr_2367 at 2745.396 kb on + strand, within Psyr_2367 at 2745.397 kb on - strand, within Psyr_2367 at 2745.397 kb on - strand at 2745.397 kb on - strand, within Psyr_2367 at 2745.447 kb on + strand, within Psyr_2367 at 2745.448 kb on - strand, within Psyr_2367 at 2745.846 kb on - strand at 2746.037 kb on + strand, within Psyr_2368 at 2746.145 kb on + strand, within Psyr_2368 at 2746.146 kb on - strand, within Psyr_2368 at 2746.259 kb on + strand, within Psyr_2368 at 2746.259 kb on + strand, within Psyr_2368 at 2746.260 kb on - strand, within Psyr_2368 at 2746.260 kb on - strand, within Psyr_2368 at 2746.260 kb on - strand, within Psyr_2368 at 2746.260 kb on - strand, within Psyr_2368 at 2746.260 kb on - strand, within Psyr_2368 at 2746.260 kb on - strand, within Psyr_2368 at 2746.260 kb on - strand, within Psyr_2368 at 2746.317 kb on - strand, within Psyr_2368 at 2746.338 kb on - strand, within Psyr_2368 at 2746.338 kb on - strand, within Psyr_2368 at 2746.338 kb on - strand, within Psyr_2368 at 2746.368 kb on - strand, within Psyr_2368 at 2746.454 kb on + strand, within Psyr_2368 at 2746.454 kb on + strand, within Psyr_2368 at 2746.562 kb on + strand, within Psyr_2368 at 2746.562 kb on + strand, within Psyr_2368 at 2746.562 kb on + strand, within Psyr_2368 at 2746.563 kb on - strand, within Psyr_2368 at 2746.643 kb on + strand, within Psyr_2368 at 2746.643 kb on + strand, within Psyr_2368 at 2746.643 kb on + strand, within Psyr_2368 at 2746.643 kb on + strand, within Psyr_2368 at 2746.644 kb on - strand, within Psyr_2368 at 2746.644 kb on - strand, within Psyr_2368 at 2746.644 kb on - strand, within Psyr_2368 at 2746.685 kb on + strand at 2746.746 kb on - strand at 2746.835 kb on + strand at 2746.835 kb on + strand at 2746.836 kb on - strand at 2746.836 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM remove 2,743,981 + +2.0 2,743,981 + +0.3 2,743,982 - +0.7 2,744,076 - -0.6 2,744,076 - -0.8 2,744,081 + -0.5 2,744,188 - -0.4 2,744,285 + +0.4 2,744,285 + -0.3 2,744,286 - +0.5 2,744,979 + -0.7 2,744,979 + +0.6 2,744,979 + +1.0 2,744,980 - -0.5 2,745,286 - Psyr_2367 0.36 -1.0 2,745,286 - Psyr_2367 0.36 -0.6 2,745,355 + Psyr_2367 0.44 -0.9 2,745,355 + Psyr_2367 0.44 -0.3 2,745,355 + Psyr_2367 0.44 -0.7 2,745,356 - Psyr_2367 0.44 -0.0 2,745,396 + Psyr_2367 0.49 -2.0 2,745,396 + Psyr_2367 0.49 -1.1 2,745,396 + Psyr_2367 0.49 -0.6 2,745,396 + Psyr_2367 0.49 +1.3 2,745,396 + Psyr_2367 0.49 +0.3 2,745,396 + Psyr_2367 0.49 +2.0 2,745,397 - Psyr_2367 0.49 -0.0 2,745,397 - +1.6 2,745,397 - Psyr_2367 0.49 -0.5 2,745,447 + Psyr_2367 0.55 -1.0 2,745,448 - Psyr_2367 0.55 -0.9 2,745,846 - +0.8 2,746,037 + Psyr_2368 0.21 -0.0 2,746,145 + Psyr_2368 0.33 +0.9 2,746,146 - Psyr_2368 0.33 -0.5 2,746,259 + Psyr_2368 0.45 +0.4 2,746,259 + Psyr_2368 0.45 -0.7 2,746,260 - Psyr_2368 0.46 +1.7 2,746,260 - Psyr_2368 0.46 +0.1 2,746,260 - Psyr_2368 0.46 +0.3 2,746,260 - Psyr_2368 0.46 -0.8 2,746,260 - Psyr_2368 0.46 -0.6 2,746,260 - Psyr_2368 0.46 -0.3 2,746,260 - Psyr_2368 0.46 -0.9 2,746,317 - Psyr_2368 0.52 -0.5 2,746,338 - Psyr_2368 0.54 -0.3 2,746,338 - Psyr_2368 0.54 -0.1 2,746,338 - Psyr_2368 0.54 +1.0 2,746,368 - Psyr_2368 0.58 -0.5 2,746,454 + Psyr_2368 0.67 -0.9 2,746,454 + Psyr_2368 0.67 -0.1 2,746,562 + Psyr_2368 0.79 +1.5 2,746,562 + Psyr_2368 0.79 +0.4 2,746,562 + Psyr_2368 0.79 -0.4 2,746,563 - Psyr_2368 0.79 +0.4 2,746,643 + Psyr_2368 0.88 +0.8 2,746,643 + Psyr_2368 0.88 -0.5 2,746,643 + Psyr_2368 0.88 -0.3 2,746,643 + Psyr_2368 0.88 -0.3 2,746,644 - Psyr_2368 0.88 +0.4 2,746,644 - Psyr_2368 0.88 +1.7 2,746,644 - Psyr_2368 0.88 +0.8 2,746,685 + +0.1 2,746,746 - -0.0 2,746,835 + -1.3 2,746,835 + -0.9 2,746,836 - -0.9 2,746,836 - -1.1
Or see this region's nucleotide sequence