Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2367

Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2366 and Psyr_2367 overlap by 4 nucleotidesPsyr_2367 and Psyr_2368 are separated by 11 nucleotidesPsyr_2368 and Psyr_2369 are separated by 50 nucleotides Psyr_2366: Psyr_2366 - ABC transporter, at 2,744,227 to 2,744,973 _2366 Psyr_2367: Psyr_2367 - ABC-3, at 2,744,970 to 2,745,839 _2367 Psyr_2368: Psyr_2368 - Periplasmic solute binding protein, at 2,745,851 to 2,746,747 _2368 Psyr_2369: Psyr_2369 - aldose 1-epimerase, at 2,746,798 to 2,747,946 _2369 Position (kb) 2744 2745 2746Strain fitness (log2 ratio) -2 -1 0 1 2at 2743.981 kb on + strandat 2743.981 kb on + strandat 2743.982 kb on - strandat 2744.076 kb on - strandat 2744.076 kb on - strandat 2744.081 kb on + strandat 2744.188 kb on - strandat 2744.285 kb on + strandat 2744.285 kb on + strandat 2744.286 kb on - strandat 2744.979 kb on + strandat 2744.979 kb on + strandat 2744.979 kb on + strandat 2744.980 kb on - strandat 2745.286 kb on - strand, within Psyr_2367at 2745.286 kb on - strand, within Psyr_2367at 2745.355 kb on + strand, within Psyr_2367at 2745.355 kb on + strand, within Psyr_2367at 2745.355 kb on + strand, within Psyr_2367at 2745.356 kb on - strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.397 kb on - strand, within Psyr_2367at 2745.397 kb on - strandat 2745.397 kb on - strand, within Psyr_2367at 2745.447 kb on + strand, within Psyr_2367at 2745.448 kb on - strand, within Psyr_2367at 2745.846 kb on - strandat 2746.037 kb on + strand, within Psyr_2368at 2746.145 kb on + strand, within Psyr_2368at 2746.146 kb on - strand, within Psyr_2368at 2746.259 kb on + strand, within Psyr_2368at 2746.259 kb on + strand, within Psyr_2368at 2746.260 kb on - strand, within Psyr_2368at 2746.260 kb on - strand, within Psyr_2368at 2746.260 kb on - strand, within Psyr_2368at 2746.260 kb on - strand, within Psyr_2368at 2746.260 kb on - strand, within Psyr_2368at 2746.260 kb on - strand, within Psyr_2368at 2746.260 kb on - strand, within Psyr_2368at 2746.317 kb on - strand, within Psyr_2368at 2746.338 kb on - strand, within Psyr_2368at 2746.338 kb on - strand, within Psyr_2368at 2746.338 kb on - strand, within Psyr_2368at 2746.368 kb on - strand, within Psyr_2368at 2746.454 kb on + strand, within Psyr_2368at 2746.454 kb on + strand, within Psyr_2368at 2746.562 kb on + strand, within Psyr_2368at 2746.562 kb on + strand, within Psyr_2368at 2746.562 kb on + strand, within Psyr_2368at 2746.563 kb on - strand, within Psyr_2368at 2746.643 kb on + strand, within Psyr_2368at 2746.643 kb on + strand, within Psyr_2368at 2746.643 kb on + strand, within Psyr_2368at 2746.643 kb on + strand, within Psyr_2368at 2746.644 kb on - strand, within Psyr_2368at 2746.644 kb on - strand, within Psyr_2368at 2746.644 kb on - strand, within Psyr_2368at 2746.685 kb on + strandat 2746.746 kb on - strandat 2746.835 kb on + strandat 2746.835 kb on + strandat 2746.836 kb on - strandat 2746.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
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2,743,981 + +2.0
2,743,981 + +0.3
2,743,982 - +0.7
2,744,076 - -0.6
2,744,076 - -0.8
2,744,081 + -0.5
2,744,188 - -0.4
2,744,285 + +0.4
2,744,285 + -0.3
2,744,286 - +0.5
2,744,979 + -0.7
2,744,979 + +0.6
2,744,979 + +1.0
2,744,980 - -0.5
2,745,286 - Psyr_2367 0.36 -1.0
2,745,286 - Psyr_2367 0.36 -0.6
2,745,355 + Psyr_2367 0.44 -0.9
2,745,355 + Psyr_2367 0.44 -0.3
2,745,355 + Psyr_2367 0.44 -0.7
2,745,356 - Psyr_2367 0.44 -0.0
2,745,396 + Psyr_2367 0.49 -2.0
2,745,396 + Psyr_2367 0.49 -1.1
2,745,396 + Psyr_2367 0.49 -0.6
2,745,396 + Psyr_2367 0.49 +1.3
2,745,396 + Psyr_2367 0.49 +0.3
2,745,396 + Psyr_2367 0.49 +2.0
2,745,397 - Psyr_2367 0.49 -0.0
2,745,397 - +1.6
2,745,397 - Psyr_2367 0.49 -0.5
2,745,447 + Psyr_2367 0.55 -1.0
2,745,448 - Psyr_2367 0.55 -0.9
2,745,846 - +0.8
2,746,037 + Psyr_2368 0.21 -0.0
2,746,145 + Psyr_2368 0.33 +0.9
2,746,146 - Psyr_2368 0.33 -0.5
2,746,259 + Psyr_2368 0.45 +0.4
2,746,259 + Psyr_2368 0.45 -0.7
2,746,260 - Psyr_2368 0.46 +1.7
2,746,260 - Psyr_2368 0.46 +0.1
2,746,260 - Psyr_2368 0.46 +0.3
2,746,260 - Psyr_2368 0.46 -0.8
2,746,260 - Psyr_2368 0.46 -0.6
2,746,260 - Psyr_2368 0.46 -0.3
2,746,260 - Psyr_2368 0.46 -0.9
2,746,317 - Psyr_2368 0.52 -0.5
2,746,338 - Psyr_2368 0.54 -0.3
2,746,338 - Psyr_2368 0.54 -0.1
2,746,338 - Psyr_2368 0.54 +1.0
2,746,368 - Psyr_2368 0.58 -0.5
2,746,454 + Psyr_2368 0.67 -0.9
2,746,454 + Psyr_2368 0.67 -0.1
2,746,562 + Psyr_2368 0.79 +1.5
2,746,562 + Psyr_2368 0.79 +0.4
2,746,562 + Psyr_2368 0.79 -0.4
2,746,563 - Psyr_2368 0.79 +0.4
2,746,643 + Psyr_2368 0.88 +0.8
2,746,643 + Psyr_2368 0.88 -0.5
2,746,643 + Psyr_2368 0.88 -0.3
2,746,643 + Psyr_2368 0.88 -0.3
2,746,644 - Psyr_2368 0.88 +0.4
2,746,644 - Psyr_2368 0.88 +1.7
2,746,644 - Psyr_2368 0.88 +0.8
2,746,685 + +0.1
2,746,746 - -0.0
2,746,835 + -1.3
2,746,835 + -0.9
2,746,836 - -0.9
2,746,836 - -1.1

Or see this region's nucleotide sequence