Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2254

Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2253 and Psyr_2254 overlap by 4 nucleotidesPsyr_2254 and Psyr_2255 overlap by 4 nucleotidesPsyr_2255 and Psyr_2256 are separated by 41 nucleotides Psyr_2253: Psyr_2253 - Phosphonate metabolism, at 2,618,095 to 2,619,174 _2253 Psyr_2254: Psyr_2254 - Phosphonate metabolism PhnJ, at 2,619,171 to 2,620,058 _2254 Psyr_2255: Psyr_2255 - ABC transporter, at 2,620,055 to 2,620,876 _2255 Psyr_2256: Psyr_2256 - ABC transporter, at 2,620,918 to 2,621,634 _2256 Position (kb) 2619 2620 2621Strain fitness (log2 ratio) -1 0 1at 2618.257 kb on + strand, within Psyr_2253at 2618.464 kb on + strand, within Psyr_2253at 2618.464 kb on + strand, within Psyr_2253at 2618.465 kb on - strand, within Psyr_2253at 2618.904 kb on + strand, within Psyr_2253at 2619.098 kb on - strandat 2619.098 kb on - strandat 2619.098 kb on - strandat 2619.225 kb on + strandat 2619.225 kb on + strandat 2619.226 kb on - strandat 2619.573 kb on + strand, within Psyr_2254at 2619.574 kb on - strand, within Psyr_2254at 2619.654 kb on + strand, within Psyr_2254at 2619.717 kb on + strand, within Psyr_2254at 2619.717 kb on + strand, within Psyr_2254at 2619.718 kb on - strand, within Psyr_2254at 2619.718 kb on - strand, within Psyr_2254at 2619.747 kb on + strand, within Psyr_2254at 2619.748 kb on - strand, within Psyr_2254at 2619.748 kb on - strand, within Psyr_2254at 2619.847 kb on - strand, within Psyr_2254at 2620.146 kb on - strand, within Psyr_2255at 2620.146 kb on - strand, within Psyr_2255at 2620.326 kb on - strand, within Psyr_2255at 2620.713 kb on + strand, within Psyr_2255at 2620.994 kb on + strand, within Psyr_2256

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
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2,618,257 + Psyr_2253 0.15 -0.0
2,618,464 + Psyr_2253 0.34 +0.8
2,618,464 + Psyr_2253 0.34 +0.5
2,618,465 - Psyr_2253 0.34 -0.3
2,618,904 + Psyr_2253 0.75 -0.5
2,619,098 - +0.3
2,619,098 - +1.3
2,619,098 - +0.7
2,619,225 + -0.4
2,619,225 + +1.6
2,619,226 - +0.1
2,619,573 + Psyr_2254 0.45 -1.2
2,619,574 - Psyr_2254 0.45 -0.6
2,619,654 + Psyr_2254 0.54 -1.4
2,619,717 + Psyr_2254 0.61 +0.8
2,619,717 + Psyr_2254 0.61 -0.3
2,619,718 - Psyr_2254 0.62 -1.3
2,619,718 - Psyr_2254 0.62 -0.0
2,619,747 + Psyr_2254 0.65 -0.1
2,619,748 - Psyr_2254 0.65 -0.3
2,619,748 - Psyr_2254 0.65 -1.4
2,619,847 - Psyr_2254 0.76 -0.7
2,620,146 - Psyr_2255 0.11 -0.4
2,620,146 - Psyr_2255 0.11 +0.1
2,620,326 - Psyr_2255 0.33 -0.4
2,620,713 + Psyr_2255 0.80 +0.6
2,620,994 + Psyr_2256 0.11 -1.2

Or see this region's nucleotide sequence