Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1947

Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1946 and Psyr_1947 are separated by 81 nucleotidesPsyr_1947 and Psyr_1948 are separated by 730 nucleotides Psyr_1946: Psyr_1946 - diaminobutyrate aminotransferase apoenzyme, at 2,230,946 to 2,232,358 _1946 Psyr_1947: Psyr_1947 - MbtH-like protein, at 2,232,440 to 2,232,658 _1947 Psyr_1948: Psyr_1948 - ABC transporter, periplasmic substrate-binding protein, putative, at 2,233,389 to 2,234,306 _1948 Position (kb) 2232 2233Strain fitness (log2 ratio) -2 -1 0 1at 2231.994 kb on - strand, within Psyr_1946at 2232.010 kb on + strand, within Psyr_1946at 2232.261 kb on + strandat 2232.262 kb on - strandat 2232.369 kb on + strandat 2232.369 kb on + strandat 2232.370 kb on - strandat 2232.375 kb on + strandat 2232.375 kb on + strandat 2232.391 kb on - strandat 2232.391 kb on - strandat 2232.391 kb on - strandat 2232.503 kb on + strand, within Psyr_1947at 2232.504 kb on - strand, within Psyr_1947at 2232.522 kb on - strand, within Psyr_1947at 2232.522 kb on - strand, within Psyr_1947at 2232.587 kb on + strand, within Psyr_1947at 2232.801 kb on - strandat 2232.817 kb on - strandat 2232.983 kb on - strandat 2233.059 kb on + strandat 2233.060 kb on - strandat 2233.374 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
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2,231,994 - Psyr_1946 0.74 -0.2
2,232,010 + Psyr_1946 0.75 -0.5
2,232,261 + -0.2
2,232,262 - +0.1
2,232,369 + -0.6
2,232,369 + -0.1
2,232,370 - +1.0
2,232,375 + -1.5
2,232,375 + -0.1
2,232,391 - -2.2
2,232,391 - -1.2
2,232,391 - +1.2
2,232,503 + Psyr_1947 0.29 -1.0
2,232,504 - Psyr_1947 0.29 -0.7
2,232,522 - Psyr_1947 0.37 -0.3
2,232,522 - Psyr_1947 0.37 -0.8
2,232,587 + Psyr_1947 0.67 +1.5
2,232,801 - -0.6
2,232,817 - -0.3
2,232,983 - -0.4
2,233,059 + -0.3
2,233,060 - +0.5
2,233,374 + -0.1

Or see this region's nucleotide sequence