Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1607 and Psyr_1608 are separated by 459 nucleotides Psyr_1608 and Psyr_1609 are separated by 251 nucleotides
Psyr_1607: Psyr_1607 - transcriptional regulator, GntR family, at 1,806,453 to 1,807,214
_1607
Psyr_1608: Psyr_1608 - ice-nucleation proteins octamer repeat protein, at 1,807,674 to 1,811,720
_1608
Psyr_1609: Psyr_1609 - Aspartyl aminopeptidase, at 1,811,972 to 1,813,261
_1609
Position (kb) 1807
1808
1809
1810
1811
1812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1806.726 kb on + strand, within Psyr_1607 at 1806.727 kb on - strand, within Psyr_1607 at 1806.727 kb on - strand, within Psyr_1607 at 1806.727 kb on - strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.928 kb on - strand, within Psyr_1607 at 1806.993 kb on + strand, within Psyr_1607 at 1806.993 kb on + strand, within Psyr_1607 at 1806.993 kb on + strand, within Psyr_1607 at 1806.994 kb on - strand, within Psyr_1607 at 1806.994 kb on - strand, within Psyr_1607 at 1807.125 kb on + strand, within Psyr_1607 at 1807.125 kb on + strand, within Psyr_1607 at 1807.181 kb on + strand at 1807.182 kb on - strand at 1807.223 kb on - strand at 1807.279 kb on + strand at 1807.284 kb on - strand at 1807.284 kb on - strand at 1807.419 kb on - strand at 1807.450 kb on - strand at 1807.453 kb on + strand at 1807.492 kb on - strand at 1807.521 kb on + strand at 1807.651 kb on - strand at 1807.651 kb on - strand at 1807.659 kb on + strand at 1807.659 kb on + strand at 1807.659 kb on + strand at 1807.659 kb on + strand at 1807.660 kb on - strand at 1807.673 kb on - strand at 1807.715 kb on + strand at 1807.715 kb on + strand at 1807.716 kb on - strand at 1807.739 kb on + strand at 1807.739 kb on + strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.742 kb on - strand at 1807.742 kb on - strand at 1807.742 kb on - strand at 1807.742 kb on - strand at 1807.774 kb on - strand at 1807.847 kb on - strand at 1808.077 kb on + strand at 1808.078 kb on - strand at 1808.078 kb on - strand at 1808.170 kb on + strand, within Psyr_1608 at 1808.170 kb on + strand, within Psyr_1608 at 1808.170 kb on + strand, within Psyr_1608 at 1808.171 kb on - strand, within Psyr_1608 at 1808.174 kb on + strand, within Psyr_1608 at 1808.174 kb on + strand, within Psyr_1608 at 1808.218 kb on - strand, within Psyr_1608 at 1808.218 kb on - strand, within Psyr_1608 at 1808.321 kb on + strand, within Psyr_1608 at 1808.487 kb on - strand, within Psyr_1608 at 1808.631 kb on - strand, within Psyr_1608 at 1808.657 kb on + strand, within Psyr_1608 at 1808.658 kb on - strand, within Psyr_1608 at 1808.729 kb on + strand, within Psyr_1608 at 1808.801 kb on + strand, within Psyr_1608 at 1809.610 kb on - strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.906 kb on - strand, within Psyr_1608 at 1809.953 kb on + strand, within Psyr_1608 at 1810.001 kb on + strand, within Psyr_1608 at 1810.002 kb on - strand, within Psyr_1608 at 1810.025 kb on + strand, within Psyr_1608 at 1810.098 kb on - strand, within Psyr_1608 at 1810.161 kb on + strand, within Psyr_1608 at 1810.234 kb on - strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.530 kb on - strand, within Psyr_1608 at 1810.530 kb on - strand, within Psyr_1608 at 1810.545 kb on + strand, within Psyr_1608 at 1810.546 kb on - strand, within Psyr_1608 at 1810.546 kb on - strand, within Psyr_1608 at 1810.673 kb on + strand, within Psyr_1608 at 1810.674 kb on - strand, within Psyr_1608 at 1810.674 kb on - strand, within Psyr_1608 at 1810.674 kb on - strand, within Psyr_1608 at 1810.737 kb on + strand, within Psyr_1608 at 1810.738 kb on - strand, within Psyr_1608 at 1810.890 kb on - strand, within Psyr_1608 at 1810.890 kb on - strand, within Psyr_1608 at 1810.914 kb on - strand, within Psyr_1608 at 1810.914 kb on - strand, within Psyr_1608 at 1810.953 kb on + strand, within Psyr_1608 at 1811.058 kb on - strand, within Psyr_1608 at 1811.058 kb on - strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.219 kb on + strand, within Psyr_1608 at 1811.220 kb on - strand, within Psyr_1608 at 1811.300 kb on - strand, within Psyr_1608 at 1811.300 kb on - strand, within Psyr_1608 at 1811.345 kb on + strand at 1811.345 kb on + strand at 1811.346 kb on - strand at 1811.394 kb on + strand at 1811.394 kb on + strand at 1811.394 kb on + strand at 1811.412 kb on - strand at 1811.489 kb on + strand at 1811.489 kb on + strand at 1811.490 kb on - strand at 1811.490 kb on - strand at 1811.520 kb on - strand at 1811.595 kb on + strand at 1811.595 kb on + strand at 1811.596 kb on - strand at 1811.644 kb on + strand at 1811.644 kb on + strand at 1811.645 kb on - strand at 1811.645 kb on - strand at 1811.645 kb on - strand at 1811.649 kb on + strand at 1811.652 kb on + strand at 1811.652 kb on + strand at 1811.673 kb on - strand at 1811.713 kb on + strand at 1811.713 kb on + strand at 1811.713 kb on + strand at 1811.714 kb on - strand at 1811.714 kb on - strand at 1811.796 kb on + strand at 1811.796 kb on + strand at 1811.796 kb on + strand at 1811.798 kb on + strand at 1811.799 kb on - strand at 1811.822 kb on - strand at 1811.822 kb on - strand at 1811.827 kb on - strand at 1811.827 kb on - strand at 1811.827 kb on - strand at 1811.827 kb on - strand at 1811.862 kb on + strand at 1811.875 kb on - strand at 1811.994 kb on + strand at 1811.994 kb on + strand at 1811.994 kb on + strand at 1811.995 kb on - strand at 1811.995 kb on - strand at 1811.995 kb on - strand at 1811.995 kb on - strand at 1812.009 kb on - strand at 1812.089 kb on + strand at 1812.089 kb on + strand at 1812.090 kb on - strand at 1812.315 kb on + strand, within Psyr_1609 at 1812.315 kb on + strand, within Psyr_1609 at 1812.316 kb on - strand, within Psyr_1609 at 1812.316 kb on - strand, within Psyr_1609 at 1812.316 kb on - strand, within Psyr_1609 at 1812.381 kb on + strand, within Psyr_1609 at 1812.381 kb on + strand, within Psyr_1609 at 1812.382 kb on - strand, within Psyr_1609 at 1812.382 kb on - strand, within Psyr_1609 at 1812.618 kb on + strand, within Psyr_1609 at 1812.619 kb on - strand, within Psyr_1609 at 1812.619 kb on - strand, within Psyr_1609 at 1812.633 kb on + strand, within Psyr_1609
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM remove 1,806,726 + Psyr_1607 0.36 +0.4 1,806,727 - Psyr_1607 0.36 +1.0 1,806,727 - Psyr_1607 0.36 +0.6 1,806,727 - Psyr_1607 0.36 -2.0 1,806,915 + Psyr_1607 0.61 +1.3 1,806,915 + Psyr_1607 0.61 -0.1 1,806,915 + Psyr_1607 0.61 -1.8 1,806,915 + Psyr_1607 0.61 +2.3 1,806,915 + Psyr_1607 0.61 -2.3 1,806,915 + Psyr_1607 0.61 -1.7 1,806,915 + Psyr_1607 0.61 -0.0 1,806,915 + Psyr_1607 0.61 -0.1 1,806,916 - Psyr_1607 0.61 -0.1 1,806,916 - Psyr_1607 0.61 -0.6 1,806,916 - Psyr_1607 0.61 -0.1 1,806,916 - Psyr_1607 0.61 +0.1 1,806,916 - Psyr_1607 0.61 -0.8 1,806,916 - Psyr_1607 0.61 +0.3 1,806,916 - Psyr_1607 0.61 -0.8 1,806,928 - Psyr_1607 0.62 +0.2 1,806,993 + Psyr_1607 0.71 +0.5 1,806,993 + Psyr_1607 0.71 -1.5 1,806,993 + Psyr_1607 0.71 +0.0 1,806,994 - Psyr_1607 0.71 -1.0 1,806,994 - Psyr_1607 0.71 -0.3 1,807,125 + Psyr_1607 0.88 -1.1 1,807,125 + Psyr_1607 0.88 -0.1 1,807,181 + -0.3 1,807,182 - -0.6 1,807,223 - -0.7 1,807,279 + +0.2 1,807,284 - +1.4 1,807,284 - +1.0 1,807,419 - -0.2 1,807,450 - -0.6 1,807,453 + +1.3 1,807,492 - -0.6 1,807,521 + +0.1 1,807,651 - -0.1 1,807,651 - +0.2 1,807,659 + +0.3 1,807,659 + -0.6 1,807,659 + -0.3 1,807,659 + -0.5 1,807,660 - -0.6 1,807,673 - -1.6 1,807,715 + -1.2 1,807,715 + +0.0 1,807,716 - -0.7 1,807,739 + -1.2 1,807,739 + +0.9 1,807,740 - +1.0 1,807,740 - -3.1 1,807,740 - -0.1 1,807,740 - -0.8 1,807,740 - -1.1 1,807,741 + +0.8 1,807,741 + +0.0 1,807,741 + +0.1 1,807,741 + +0.1 1,807,742 - +0.6 1,807,742 - +0.4 1,807,742 - -0.8 1,807,742 - -2.0 1,807,774 - +0.5 1,807,847 - +0.0 1,808,077 + +1.4 1,808,078 - +0.0 1,808,078 - +0.4 1,808,170 + Psyr_1608 0.12 +0.3 1,808,170 + Psyr_1608 0.12 -0.2 1,808,170 + Psyr_1608 0.12 +0.1 1,808,171 - Psyr_1608 0.12 -1.1 1,808,174 + Psyr_1608 0.12 +0.7 1,808,174 + Psyr_1608 0.12 -0.0 1,808,218 - Psyr_1608 0.13 -0.3 1,808,218 - Psyr_1608 0.13 +0.6 1,808,321 + Psyr_1608 0.16 +1.0 1,808,487 - Psyr_1608 0.20 -1.4 1,808,631 - Psyr_1608 0.24 -0.2 1,808,657 + Psyr_1608 0.24 +0.0 1,808,658 - Psyr_1608 0.24 +0.1 1,808,729 + Psyr_1608 0.26 +0.5 1,808,801 + Psyr_1608 0.28 -0.4 1,809,610 - Psyr_1608 0.48 +1.4 1,809,883 + Psyr_1608 0.55 -0.0 1,809,883 + Psyr_1608 0.55 -0.5 1,809,883 + Psyr_1608 0.55 +0.2 1,809,883 + Psyr_1608 0.55 +1.9 1,809,883 + Psyr_1608 0.55 +0.6 1,809,884 - Psyr_1608 0.55 +0.1 1,809,884 - Psyr_1608 0.55 +1.6 1,809,887 + Psyr_1608 0.55 +0.6 1,809,887 + Psyr_1608 0.55 +0.0 1,809,887 + Psyr_1608 0.55 +0.6 1,809,887 + Psyr_1608 0.55 +0.3 1,809,887 + Psyr_1608 0.55 -0.2 1,809,888 - Psyr_1608 0.55 +1.2 1,809,888 - Psyr_1608 0.55 +0.2 1,809,888 - Psyr_1608 0.55 -1.1 1,809,888 - Psyr_1608 0.55 +0.2 1,809,888 - Psyr_1608 0.55 +0.7 1,809,888 - Psyr_1608 0.55 +0.7 1,809,888 - Psyr_1608 0.55 -0.5 1,809,888 - Psyr_1608 0.55 +0.4 1,809,888 - Psyr_1608 0.55 +1.0 1,809,888 - Psyr_1608 0.55 +0.7 1,809,888 - Psyr_1608 0.55 -0.1 1,809,906 - Psyr_1608 0.55 -0.2 1,809,953 + Psyr_1608 0.56 -0.2 1,810,001 + Psyr_1608 0.57 +1.8 1,810,002 - Psyr_1608 0.58 -0.4 1,810,025 + Psyr_1608 0.58 +0.8 1,810,098 - Psyr_1608 0.60 +1.1 1,810,161 + Psyr_1608 0.61 -0.6 1,810,234 - Psyr_1608 0.63 +1.0 1,810,529 + Psyr_1608 0.71 -1.0 1,810,529 + Psyr_1608 0.71 +0.3 1,810,529 + Psyr_1608 0.71 -0.8 1,810,530 - Psyr_1608 0.71 +1.3 1,810,530 - Psyr_1608 0.71 -0.9 1,810,545 + Psyr_1608 0.71 +0.1 1,810,546 - Psyr_1608 0.71 +0.4 1,810,546 - Psyr_1608 0.71 +0.9 1,810,673 + Psyr_1608 0.74 -0.6 1,810,674 - Psyr_1608 0.74 -1.6 1,810,674 - Psyr_1608 0.74 +0.9 1,810,674 - Psyr_1608 0.74 -0.4 1,810,737 + Psyr_1608 0.76 +0.6 1,810,738 - Psyr_1608 0.76 -0.4 1,810,890 - Psyr_1608 0.79 +1.4 1,810,890 - Psyr_1608 0.79 +2.0 1,810,914 - Psyr_1608 0.80 -1.4 1,810,914 - Psyr_1608 0.80 +0.4 1,810,953 + Psyr_1608 0.81 +1.1 1,811,058 - Psyr_1608 0.84 -0.8 1,811,058 - Psyr_1608 0.84 +0.1 1,811,111 + Psyr_1608 0.85 -0.4 1,811,111 + Psyr_1608 0.85 -0.5 1,811,111 + Psyr_1608 0.85 +0.7 1,811,111 + Psyr_1608 0.85 +0.3 1,811,111 + Psyr_1608 0.85 -0.3 1,811,112 - Psyr_1608 0.85 +0.3 1,811,112 - Psyr_1608 0.85 +1.4 1,811,112 - Psyr_1608 0.85 -0.2 1,811,112 - Psyr_1608 0.85 -1.2 1,811,112 - Psyr_1608 0.85 +0.4 1,811,112 - Psyr_1608 0.85 +0.7 1,811,219 + Psyr_1608 0.88 +0.2 1,811,220 - Psyr_1608 0.88 +1.0 1,811,300 - Psyr_1608 0.90 +0.4 1,811,300 - Psyr_1608 0.90 +1.4 1,811,345 + -1.3 1,811,345 + -0.1 1,811,346 - -0.6 1,811,394 + -0.0 1,811,394 + +2.0 1,811,394 + -0.8 1,811,412 - +0.3 1,811,489 + +0.1 1,811,489 + -0.1 1,811,490 - +0.4 1,811,490 - -0.4 1,811,520 - -1.6 1,811,595 + -0.5 1,811,595 + +1.8 1,811,596 - -0.7 1,811,644 + +0.3 1,811,644 + +0.8 1,811,645 - +0.0 1,811,645 - -0.1 1,811,645 - +1.0 1,811,649 + +0.6 1,811,652 + -0.1 1,811,652 + +0.9 1,811,673 - -0.7 1,811,713 + +0.4 1,811,713 + +0.3 1,811,713 + -1.0 1,811,714 - -1.7 1,811,714 - -0.6 1,811,796 + +0.3 1,811,796 + -0.6 1,811,796 + -0.4 1,811,798 + -0.7 1,811,799 - +0.4 1,811,822 - -1.3 1,811,822 - -2.8 1,811,827 - -2.5 1,811,827 - -2.1 1,811,827 - -1.0 1,811,827 - +0.3 1,811,862 + +0.4 1,811,875 - -0.3 1,811,994 + +0.7 1,811,994 + +0.2 1,811,994 + +0.0 1,811,995 - +0.3 1,811,995 - +0.9 1,811,995 - +0.0 1,811,995 - -1.0 1,812,009 - -0.3 1,812,089 + -0.4 1,812,089 + -0.4 1,812,090 - -0.2 1,812,315 + Psyr_1609 0.27 -0.5 1,812,315 + Psyr_1609 0.27 -1.0 1,812,316 - Psyr_1609 0.27 -0.8 1,812,316 - Psyr_1609 0.27 -0.4 1,812,316 - Psyr_1609 0.27 -2.1 1,812,381 + Psyr_1609 0.32 -1.0 1,812,381 + Psyr_1609 0.32 +0.3 1,812,382 - Psyr_1609 0.32 -0.2 1,812,382 - Psyr_1609 0.32 +0.3 1,812,618 + Psyr_1609 0.50 -0.1 1,812,619 - Psyr_1609 0.50 +1.5 1,812,619 - Psyr_1609 0.50 +1.3 1,812,633 + Psyr_1609 0.51 +1.1
Or see this region's nucleotide sequence