Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0786 and Psyr_0787 are separated by 46 nucleotides Psyr_0787 and Psyr_0788 are separated by 23 nucleotides Psyr_0788 and Psyr_0789 are separated by 9 nucleotides Psyr_0789 and Psyr_0790 are separated by 552 nucleotides
Psyr_0786: Psyr_0786 - CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt, at 892,574 to 894,691
_0786
Psyr_0787: Psyr_0787 - Sulfate transporter/antisigma-factor antagonist STAS, at 894,738 to 895,028
_0787
Psyr_0788: Psyr_0788 - Response regulator receiver, at 895,052 to 895,420
_0788
Psyr_0789: Psyr_0789 - chemotaxis sensory transducer, at 895,430 to 896,647
_0789
Psyr_0790: Psyr_0790 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 897,200 to 898,498
_0790
Position (kb) 895
896
897 Strain fitness (log2 ratio) -2
-1
0
1
2 at 894.509 kb on - strand at 894.682 kb on + strand at 894.682 kb on + strand at 894.683 kb on - strand at 894.683 kb on - strand at 894.683 kb on - strand at 894.683 kb on - strand at 894.685 kb on + strand at 894.685 kb on + strand at 894.685 kb on + strand at 894.686 kb on - strand at 894.686 kb on - strand at 894.722 kb on - strand at 894.739 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.759 kb on - strand at 894.759 kb on - strand at 894.759 kb on - strand at 894.759 kb on - strand at 894.762 kb on + strand at 894.762 kb on + strand at 894.762 kb on + strand at 894.763 kb on - strand at 894.763 kb on - strand at 894.763 kb on - strand at 894.961 kb on + strand, within Psyr_0787 at 894.961 kb on + strand, within Psyr_0787 at 894.961 kb on + strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.982 kb on - strand, within Psyr_0787 at 894.982 kb on - strand, within Psyr_0787 at 894.982 kb on - strand, within Psyr_0787 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.201 kb on - strand, within Psyr_0788 at 895.201 kb on - strand, within Psyr_0788 at 895.201 kb on - strand, within Psyr_0788 at 895.341 kb on + strand, within Psyr_0788 at 895.406 kb on + strand at 895.406 kb on + strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.415 kb on - strand at 895.425 kb on + strand at 895.425 kb on + strand at 895.425 kb on + strand at 895.425 kb on + strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.509 kb on + strand at 895.509 kb on + strand at 895.510 kb on - strand at 895.513 kb on + strand at 895.514 kb on - strand at 895.514 kb on - strand at 895.514 kb on - strand at 895.619 kb on + strand, within Psyr_0789 at 895.620 kb on - strand, within Psyr_0789 at 895.620 kb on - strand, within Psyr_0789 at 895.699 kb on - strand, within Psyr_0789 at 895.766 kb on + strand, within Psyr_0789 at 895.766 kb on + strand, within Psyr_0789 at 895.766 kb on + strand, within Psyr_0789 at 895.767 kb on - strand, within Psyr_0789 at 895.767 kb on - strand, within Psyr_0789 at 895.767 kb on - strand, within Psyr_0789 at 896.065 kb on - strand, within Psyr_0789 at 896.144 kb on + strand, within Psyr_0789 at 896.145 kb on - strand, within Psyr_0789 at 896.626 kb on + strand at 896.626 kb on + strand at 896.626 kb on + strand at 896.626 kb on + strand at 896.626 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.632 kb on - strand at 896.632 kb on - strand at 896.632 kb on - strand at 896.677 kb on + strand at 896.677 kb on + strand at 896.678 kb on - strand at 896.678 kb on - strand at 896.693 kb on + strand at 896.771 kb on + strand at 896.933 kb on - strand at 897.147 kb on + strand at 897.201 kb on + strand at 897.201 kb on + strand at 897.279 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.433 kb on - strand, within Psyr_0790 at 897.433 kb on - strand, within Psyr_0790 at 897.578 kb on - strand, within Psyr_0790
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM remove 894,509 - -1.0 894,682 + -0.0 894,682 + -0.9 894,683 - +0.8 894,683 - -0.5 894,683 - +0.1 894,683 - -0.2 894,685 + +1.7 894,685 + +0.5 894,685 + -0.7 894,686 - +0.2 894,686 - -0.5 894,722 - +0.6 894,739 + +0.2 894,758 + -0.1 894,758 + +0.6 894,758 + +0.1 894,758 + +0.2 894,758 + -0.6 894,758 + +0.7 894,758 + +2.1 894,758 + +0.3 894,759 - -0.8 894,759 - -0.8 894,759 - -0.3 894,759 - -2.0 894,762 + +0.5 894,762 + +0.2 894,762 + +0.4 894,763 - +0.1 894,763 - -0.5 894,763 - +1.5 894,961 + Psyr_0787 0.77 +0.9 894,961 + Psyr_0787 0.77 +1.1 894,961 + Psyr_0787 0.77 -1.1 894,962 - Psyr_0787 0.77 +0.6 894,962 - Psyr_0787 0.77 +1.1 894,962 - Psyr_0787 0.77 +0.4 894,962 - Psyr_0787 0.77 +0.2 894,962 - Psyr_0787 0.77 -0.1 894,962 - Psyr_0787 0.77 -1.1 894,962 - Psyr_0787 0.77 +0.4 894,962 - Psyr_0787 0.77 -1.2 894,982 - Psyr_0787 0.84 +0.2 894,982 - Psyr_0787 0.84 +0.8 894,982 - Psyr_0787 0.84 -0.7 895,200 + Psyr_0788 0.40 +0.2 895,200 + Psyr_0788 0.40 -0.6 895,200 + Psyr_0788 0.40 -0.9 895,200 + Psyr_0788 0.40 +0.7 895,200 + Psyr_0788 0.40 +0.1 895,200 + Psyr_0788 0.40 -0.1 895,200 + Psyr_0788 0.40 +0.2 895,201 - Psyr_0788 0.40 +0.5 895,201 - Psyr_0788 0.40 -0.5 895,201 - Psyr_0788 0.40 +0.3 895,341 + Psyr_0788 0.78 +1.0 895,406 + -0.3 895,406 + +0.6 895,407 - -0.1 895,407 - +0.0 895,407 - -0.7 895,407 - +0.9 895,407 - +0.9 895,407 - +0.5 895,415 - +0.4 895,425 + +0.1 895,425 + -1.2 895,425 + +1.1 895,425 + -0.0 895,426 - +0.0 895,426 - +0.0 895,426 - +0.4 895,426 - +0.2 895,426 - +0.5 895,509 + -0.1 895,509 + -1.1 895,510 - +0.7 895,513 + -2.1 895,514 - +0.4 895,514 - +0.3 895,514 - +0.1 895,619 + Psyr_0789 0.16 -1.5 895,620 - Psyr_0789 0.16 -1.5 895,620 - Psyr_0789 0.16 -0.2 895,699 - Psyr_0789 0.22 -1.3 895,766 + Psyr_0789 0.28 -0.1 895,766 + Psyr_0789 0.28 -0.0 895,766 + Psyr_0789 0.28 -2.3 895,767 - Psyr_0789 0.28 +1.5 895,767 - Psyr_0789 0.28 -1.1 895,767 - Psyr_0789 0.28 -0.3 896,065 - Psyr_0789 0.52 -1.4 896,144 + Psyr_0789 0.59 -0.4 896,145 - Psyr_0789 0.59 +1.1 896,626 + +0.3 896,626 + -1.5 896,626 + +0.9 896,626 + +0.9 896,626 + -0.4 896,631 + +0.9 896,631 + -0.6 896,631 + +1.9 896,631 + -1.4 896,631 + +0.2 896,632 - -0.0 896,632 - -0.1 896,632 - +0.7 896,677 + +0.7 896,677 + +2.1 896,678 - -0.2 896,678 - -0.2 896,693 + -1.3 896,771 + +0.9 896,933 - -0.1 897,147 + +0.3 897,201 + -0.6 897,201 + -0.2 897,279 + +0.2 897,315 + +2.1 897,315 + +0.6 897,315 + -0.0 897,315 + -0.1 897,315 + +0.1 897,316 - -0.3 897,316 - -0.8 897,316 - +0.5 897,316 - -0.5 897,316 - +0.7 897,316 - -1.1 897,316 - +0.5 897,426 + Psyr_0790 0.17 +1.1 897,426 + Psyr_0790 0.17 +1.2 897,426 + Psyr_0790 0.17 +1.3 897,426 + Psyr_0790 0.17 -0.1 897,426 + Psyr_0790 0.17 +0.3 897,426 + Psyr_0790 0.17 -0.6 897,426 + Psyr_0790 0.17 -0.6 897,426 + Psyr_0790 0.17 -0.4 897,426 + Psyr_0790 0.17 +0.9 897,426 + Psyr_0790 0.17 -0.3 897,426 + Psyr_0790 0.17 -0.5 897,427 - Psyr_0790 0.17 +0.2 897,427 - Psyr_0790 0.17 -0.4 897,427 - Psyr_0790 0.17 +0.0 897,427 - Psyr_0790 0.17 +1.1 897,427 - Psyr_0790 0.17 -0.6 897,427 - Psyr_0790 0.17 +0.8 897,427 - Psyr_0790 0.17 +1.9 897,427 - Psyr_0790 0.17 -0.6 897,427 - Psyr_0790 0.17 -0.1 897,427 - Psyr_0790 0.17 +1.6 897,427 - Psyr_0790 0.17 +0.5 897,432 + Psyr_0790 0.18 -0.6 897,432 + Psyr_0790 0.18 -0.0 897,432 + Psyr_0790 0.18 -0.9 897,432 + Psyr_0790 0.18 -0.2 897,432 + Psyr_0790 0.18 +0.8 897,433 - Psyr_0790 0.18 -1.0 897,433 - Psyr_0790 0.18 +0.2 897,578 - Psyr_0790 0.29 +0.1
Or see this region's nucleotide sequence