Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0281

Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0280 and Psyr_0281 are separated by 307 nucleotidesPsyr_0281 and Psyr_0282 overlap by 1 nucleotidesPsyr_0282 and Psyr_0283 are separated by 50 nucleotides Psyr_0280: Psyr_0280 - Catalase, at 297,477 to 299,627 _0280 Psyr_0281: Psyr_0281 - ABC transporter, at 299,935 to 300,942 _0281 Psyr_0282: Psyr_0282 - Binding-protein-dependent transport systems inner membrane component, at 300,942 to 301,616 _0282 Psyr_0283: Psyr_0283 - NLPA lipoprotein, at 301,667 to 302,440 _0283 Position (kb) 299 300 301Strain fitness (log2 ratio) -3 -2 -1 0 1at 299.158 kb on + strand, within Psyr_0280at 299.159 kb on - strand, within Psyr_0280at 299.159 kb on - strand, within Psyr_0280at 299.283 kb on - strand, within Psyr_0280at 299.305 kb on + strand, within Psyr_0280at 299.305 kb on + strand, within Psyr_0280at 299.305 kb on + strand, within Psyr_0280at 299.306 kb on - strand, within Psyr_0280at 299.317 kb on + strand, within Psyr_0280at 299.317 kb on + strand, within Psyr_0280at 299.317 kb on + strand, within Psyr_0280at 299.318 kb on - strand, within Psyr_0280at 299.318 kb on - strand, within Psyr_0280at 299.318 kb on - strand, within Psyr_0280at 299.318 kb on - strand, within Psyr_0280at 299.363 kb on + strand, within Psyr_0280at 299.639 kb on + strandat 299.639 kb on + strandat 299.639 kb on + strandat 299.639 kb on + strandat 299.640 kb on - strandat 299.674 kb on + strandat 299.674 kb on + strandat 299.748 kb on - strandat 299.748 kb on - strandat 299.758 kb on + strandat 299.758 kb on + strandat 299.758 kb on + strandat 299.758 kb on + strandat 299.759 kb on - strandat 299.759 kb on - strandat 299.759 kb on - strandat 299.779 kb on + strandat 299.779 kb on + strandat 299.780 kb on - strandat 299.805 kb on - strandat 299.808 kb on + strandat 299.809 kb on - strandat 299.809 kb on - strandat 299.809 kb on - strandat 299.809 kb on - strandat 299.809 kb on - strandat 299.809 kb on - strandat 299.809 kb on - strandat 299.809 kb on - strandat 299.816 kb on - strandat 299.870 kb on + strandat 299.950 kb on - strandat 299.987 kb on + strandat 300.069 kb on + strand, within Psyr_0281at 300.758 kb on - strand, within Psyr_0281at 300.758 kb on - strand, within Psyr_0281at 300.758 kb on - strand, within Psyr_0281at 300.758 kb on - strand, within Psyr_0281at 300.822 kb on + strand, within Psyr_0281at 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.925 kb on - strandat 300.925 kb on - strandat 301.119 kb on + strand, within Psyr_0282at 301.119 kb on + strand, within Psyr_0282at 301.119 kb on + strand, within Psyr_0282at 301.119 kb on + strand, within Psyr_0282at 301.119 kb on + strand, within Psyr_0282at 301.120 kb on - strand, within Psyr_0282at 301.120 kb on - strand, within Psyr_0282at 301.543 kb on + strand, within Psyr_0282at 301.544 kb on - strand, within Psyr_0282at 301.544 kb on - strand, within Psyr_0282at 301.544 kb on - strand, within Psyr_0282at 301.544 kb on - strand, within Psyr_0282at 301.631 kb on - strandat 301.678 kb on - strandat 301.678 kb on - strandat 301.678 kb on - strandat 301.835 kb on + strand, within Psyr_0283at 301.835 kb on + strand, within Psyr_0283at 301.835 kb on + strand, within Psyr_0283at 301.835 kb on + strand, within Psyr_0283at 301.836 kb on - strand, within Psyr_0283at 301.836 kb on - strand, within Psyr_0283at 301.836 kb on - strand, within Psyr_0283at 301.836 kb on - strand, within Psyr_0283at 301.836 kb on - strand, within Psyr_0283at 301.871 kb on - strand, within Psyr_0283

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
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299,158 + Psyr_0280 0.78 -0.3
299,159 - Psyr_0280 0.78 +1.6
299,159 - Psyr_0280 0.78 +0.2
299,283 - Psyr_0280 0.84 -0.4
299,305 + Psyr_0280 0.85 -1.1
299,305 + Psyr_0280 0.85 +0.3
299,305 + Psyr_0280 0.85 -0.6
299,306 - Psyr_0280 0.85 -0.2
299,317 + Psyr_0280 0.86 +0.1
299,317 + Psyr_0280 0.86 -0.1
299,317 + Psyr_0280 0.86 +0.1
299,318 - Psyr_0280 0.86 -0.6
299,318 - Psyr_0280 0.86 +0.2
299,318 - Psyr_0280 0.86 +0.0
299,318 - Psyr_0280 0.86 -0.1
299,363 + Psyr_0280 0.88 +1.2
299,639 + +0.1
299,639 + +0.8
299,639 + -0.1
299,639 + -0.5
299,640 - -0.2
299,674 + -0.8
299,674 + -0.0
299,748 - +0.4
299,748 - -0.4
299,758 + +0.5
299,758 + -0.3
299,758 + +0.2
299,758 + -0.1
299,759 - -1.0
299,759 - -0.8
299,759 - -1.2
299,779 + +0.1
299,779 + -0.4
299,780 - -0.4
299,805 - -1.9
299,808 + -0.3
299,809 - -2.1
299,809 - -1.2
299,809 - -0.4
299,809 - +0.2
299,809 - -0.6
299,809 - -1.5
299,809 - +0.6
299,809 - -0.2
299,816 - +0.1
299,870 + +0.5
299,950 - -1.1
299,987 + -1.0
300,069 + Psyr_0281 0.13 -1.4
300,758 - Psyr_0281 0.82 -1.0
300,758 - Psyr_0281 0.82 -0.0
300,758 - Psyr_0281 0.82 -1.0
300,758 - Psyr_0281 0.82 +0.4
300,822 + Psyr_0281 0.88 -2.9
300,924 + +0.1
300,924 + -2.2
300,924 + -0.2
300,925 - -1.9
300,925 - -1.5
301,119 + Psyr_0282 0.26 -0.0
301,119 + Psyr_0282 0.26 -2.6
301,119 + Psyr_0282 0.26 -0.7
301,119 + Psyr_0282 0.26 -1.3
301,119 + Psyr_0282 0.26 -1.2
301,120 - Psyr_0282 0.26 -1.4
301,120 - Psyr_0282 0.26 -0.2
301,543 + Psyr_0282 0.89 -1.1
301,544 - Psyr_0282 0.89 -0.8
301,544 - Psyr_0282 0.89 -1.2
301,544 - Psyr_0282 0.89 -1.0
301,544 - Psyr_0282 0.89 -0.1
301,631 - +1.0
301,678 - +0.0
301,678 - -0.2
301,678 - -0.7
301,835 + Psyr_0283 0.22 -1.2
301,835 + Psyr_0283 0.22 -0.1
301,835 + Psyr_0283 0.22 +0.2
301,835 + Psyr_0283 0.22 -0.4
301,836 - Psyr_0283 0.22 -1.2
301,836 - Psyr_0283 0.22 +0.1
301,836 - Psyr_0283 0.22 -0.1
301,836 - Psyr_0283 0.22 -0.6
301,836 - Psyr_0283 0.22 +0.4
301,871 - Psyr_0283 0.26 +0.2

Or see this region's nucleotide sequence