Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0156

Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0154 and Psyr_0155 are separated by 1 nucleotidesPsyr_0155 and Psyr_0156 overlap by 4 nucleotidesPsyr_0156 and Psyr_0157 are separated by 31 nucleotides Psyr_0154: Psyr_0154 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 166,777 to 168,618 _0154 Psyr_0155: Psyr_0155 - Binding-protein-dependent transport systems inner membrane component, at 168,620 to 169,498 _0155 Psyr_0156: Psyr_0156 - Binding-protein-dependent transport systems inner membrane component, at 169,495 to 170,451 _0156 Psyr_0157: Psyr_0157 - Twin-arginine translocation pathway signal, at 170,483 to 172,120 _0157 Position (kb) 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2at 168.794 kb on + strand, within Psyr_0155at 168.794 kb on + strand, within Psyr_0155at 168.795 kb on - strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.916 kb on + strand, within Psyr_0155at 168.916 kb on + strand, within Psyr_0155at 168.917 kb on - strand, within Psyr_0155at 168.917 kb on - strand, within Psyr_0155at 168.951 kb on + strand, within Psyr_0155at 168.952 kb on - strand, within Psyr_0155at 168.952 kb on - strand, within Psyr_0155at 169.011 kb on + strand, within Psyr_0155at 169.011 kb on + strand, within Psyr_0155at 169.011 kb on + strand, within Psyr_0155at 169.272 kb on + strand, within Psyr_0155at 169.272 kb on + strand, within Psyr_0155at 169.272 kb on + strand, within Psyr_0155at 169.273 kb on - strand, within Psyr_0155at 169.273 kb on - strand, within Psyr_0155at 169.291 kb on - strand, within Psyr_0155at 169.562 kb on + strandat 169.563 kb on - strandat 169.652 kb on + strand, within Psyr_0156at 169.653 kb on - strand, within Psyr_0156at 169.694 kb on + strand, within Psyr_0156at 169.694 kb on + strand, within Psyr_0156at 169.760 kb on - strand, within Psyr_0156at 169.760 kb on - strand, within Psyr_0156at 169.898 kb on + strand, within Psyr_0156at 169.898 kb on + strand, within Psyr_0156at 169.898 kb on + strand, within Psyr_0156at 169.899 kb on - strand, within Psyr_0156at 169.899 kb on - strand, within Psyr_0156at 169.899 kb on - strand, within Psyr_0156at 169.899 kb on - strand, within Psyr_0156at 169.940 kb on + strand, within Psyr_0156at 169.940 kb on + strand, within Psyr_0156at 169.941 kb on - strand, within Psyr_0156at 170.072 kb on + strand, within Psyr_0156at 170.073 kb on - strand, within Psyr_0156at 170.073 kb on - strand, within Psyr_0156at 170.247 kb on - strand, within Psyr_0156at 170.445 kb on + strandat 170.445 kb on + strandat 170.445 kb on + strandat 170.446 kb on - strandat 170.446 kb on - strandat 170.446 kb on - strandat 170.446 kb on - strandat 170.446 kb on - strandat 170.517 kb on + strandat 170.517 kb on + strandat 170.518 kb on - strandat 170.518 kb on - strandat 170.518 kb on - strandat 170.518 kb on - strandat 170.518 kb on - strandat 170.551 kb on - strandat 170.646 kb on + strandat 170.647 kb on - strand, within Psyr_0157at 170.647 kb on - strand, within Psyr_0157at 170.647 kb on - strand, within Psyr_0157at 171.015 kb on + strand, within Psyr_0157at 171.046 kb on - strand, within Psyr_0157at 171.135 kb on + strand, within Psyr_0157at 171.135 kb on + strand, within Psyr_0157at 171.136 kb on - strand, within Psyr_0157at 171.136 kb on - strand, within Psyr_0157at 171.204 kb on + strand, within Psyr_0157at 171.204 kb on + strand, within Psyr_0157at 171.204 kb on + strand, within Psyr_0157at 171.204 kb on + strand, within Psyr_0157at 171.204 kb on + strand, within Psyr_0157at 171.205 kb on - strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.387 kb on + strand, within Psyr_0157at 171.387 kb on + strand, within Psyr_0157at 171.388 kb on - strand, within Psyr_0157

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
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168,794 + Psyr_0155 0.20 +0.4
168,794 + Psyr_0155 0.20 -0.5
168,795 - Psyr_0155 0.20 -0.6
168,912 + Psyr_0155 0.33 -0.4
168,912 + Psyr_0155 0.33 -0.2
168,912 + Psyr_0155 0.33 +0.6
168,912 + Psyr_0155 0.33 +0.5
168,912 + Psyr_0155 0.33 -0.2
168,912 + Psyr_0155 0.33 -0.0
168,912 + Psyr_0155 0.33 -0.6
168,912 + Psyr_0155 0.33 +0.6
168,912 + Psyr_0155 0.33 +0.8
168,912 + Psyr_0155 0.33 +0.0
168,912 + Psyr_0155 0.33 -0.1
168,912 + Psyr_0155 0.33 +0.6
168,912 + Psyr_0155 0.33 +0.2
168,913 - Psyr_0155 0.33 -0.4
168,913 - Psyr_0155 0.33 +0.4
168,913 - Psyr_0155 0.33 -1.4
168,913 - Psyr_0155 0.33 +0.1
168,913 - Psyr_0155 0.33 +0.4
168,913 - Psyr_0155 0.33 -0.4
168,913 - Psyr_0155 0.33 +0.0
168,913 - Psyr_0155 0.33 -1.6
168,913 - Psyr_0155 0.33 -0.1
168,913 - Psyr_0155 0.33 +1.1
168,913 - Psyr_0155 0.33 +0.5
168,913 - Psyr_0155 0.33 +0.6
168,913 - Psyr_0155 0.33 -0.3
168,916 + Psyr_0155 0.34 -0.8
168,916 + Psyr_0155 0.34 -0.3
168,917 - Psyr_0155 0.34 +0.5
168,917 - Psyr_0155 0.34 -0.6
168,951 + Psyr_0155 0.38 +0.7
168,952 - Psyr_0155 0.38 -0.7
168,952 - Psyr_0155 0.38 +0.2
169,011 + Psyr_0155 0.44 +1.0
169,011 + Psyr_0155 0.44 +0.3
169,011 + Psyr_0155 0.44 +1.0
169,272 + Psyr_0155 0.74 -0.1
169,272 + Psyr_0155 0.74 -1.0
169,272 + Psyr_0155 0.74 +0.7
169,273 - Psyr_0155 0.74 +1.3
169,273 - Psyr_0155 0.74 +1.3
169,291 - Psyr_0155 0.76 -0.5
169,562 + -0.8
169,563 - -0.8
169,652 + Psyr_0156 0.16 -0.7
169,653 - Psyr_0156 0.17 -1.0
169,694 + Psyr_0156 0.21 +0.3
169,694 + Psyr_0156 0.21 -0.4
169,760 - Psyr_0156 0.28 -0.1
169,760 - Psyr_0156 0.28 +0.4
169,898 + Psyr_0156 0.42 -0.0
169,898 + Psyr_0156 0.42 -1.7
169,898 + Psyr_0156 0.42 +0.2
169,899 - Psyr_0156 0.42 +0.7
169,899 - Psyr_0156 0.42 -0.3
169,899 - Psyr_0156 0.42 -2.0
169,899 - Psyr_0156 0.42 +0.1
169,940 + Psyr_0156 0.46 -0.4
169,940 + Psyr_0156 0.46 -1.4
169,941 - Psyr_0156 0.47 -0.7
170,072 + Psyr_0156 0.60 -1.0
170,073 - Psyr_0156 0.60 -0.9
170,073 - Psyr_0156 0.60 +0.3
170,247 - Psyr_0156 0.79 -1.2
170,445 + -1.1
170,445 + +0.4
170,445 + -0.2
170,446 - -0.4
170,446 - +0.6
170,446 - +0.2
170,446 - -0.8
170,446 - +0.9
170,517 + +0.1
170,517 + -0.3
170,518 - +0.3
170,518 - +0.8
170,518 - -0.4
170,518 - +0.3
170,518 - -0.5
170,551 - +0.3
170,646 + +0.8
170,647 - Psyr_0157 0.10 +0.2
170,647 - Psyr_0157 0.10 +1.0
170,647 - Psyr_0157 0.10 +0.4
171,015 + Psyr_0157 0.32 +0.2
171,046 - Psyr_0157 0.34 +0.2
171,135 + Psyr_0157 0.40 -0.1
171,135 + Psyr_0157 0.40 +0.6
171,136 - Psyr_0157 0.40 -0.4
171,136 - Psyr_0157 0.40 +0.6
171,204 + Psyr_0157 0.44 -1.3
171,204 + Psyr_0157 0.44 -0.3
171,204 + Psyr_0157 0.44 -0.5
171,204 + Psyr_0157 0.44 +0.5
171,204 + Psyr_0157 0.44 -0.1
171,205 - Psyr_0157 0.44 +1.3
171,293 + Psyr_0157 0.49 -0.2
171,293 + Psyr_0157 0.49 +1.3
171,293 + Psyr_0157 0.49 +0.4
171,293 + Psyr_0157 0.49 +0.2
171,293 + Psyr_0157 0.49 +0.1
171,293 + Psyr_0157 0.49 -1.5
171,293 + Psyr_0157 0.49 +0.1
171,293 + Psyr_0157 0.49 -1.9
171,293 + Psyr_0157 0.49 -1.9
171,293 - Psyr_0157 0.49 -0.4
171,294 - Psyr_0157 0.50 -1.6
171,294 - Psyr_0157 0.50 +0.7
171,294 - Psyr_0157 0.50 +2.0
171,294 - Psyr_0157 0.50 +0.5
171,294 - Psyr_0157 0.50 +0.8
171,294 - Psyr_0157 0.50 -1.1
171,294 - Psyr_0157 0.50 +0.5
171,294 - Psyr_0157 0.50 +0.9
171,294 - Psyr_0157 0.50 +0.0
171,294 - Psyr_0157 0.50 -0.2
171,294 - Psyr_0157 0.50 +0.6
171,294 - Psyr_0157 0.50 -0.0
171,294 - Psyr_0157 0.50 +0.4
171,294 - Psyr_0157 0.50 +1.5
171,294 - Psyr_0157 0.50 -0.1
171,294 - Psyr_0157 0.50 +0.1
171,294 - Psyr_0157 0.50 -0.9
171,387 + Psyr_0157 0.55 -0.2
171,387 + Psyr_0157 0.55 -1.4
171,388 - Psyr_0157 0.55 +1.3

Or see this region's nucleotide sequence