Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_696

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_695 and Pf1N1B4_696 overlap by 4 nucleotidesPf1N1B4_696 and Pf1N1B4_697 are separated by 159 nucleotides Pf1N1B4_695 - Aldehyde dehydrogenase (EC 1.2.1.3), at 793,533 to 794,981 _695 Pf1N1B4_696 - Acetolactate synthase, large subunit (EC 2.2.1.6), at 794,978 to 796,615 _696 Pf1N1B4_697 - Glycine cleavage system transcriptional activator, at 796,775 to 797,656 _697 Position (kb) 794 795 796 797Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 794.196 kb on + strand, within Pf1N1B4_695at 794.450 kb on + strand, within Pf1N1B4_695at 794.457 kb on + strand, within Pf1N1B4_695at 794.641 kb on + strandat 794.642 kb on - strand, within Pf1N1B4_695at 794.645 kb on - strand, within Pf1N1B4_695at 794.645 kb on - strand, within Pf1N1B4_695at 794.950 kb on + strandat 794.950 kb on + strandat 794.950 kb on + strandat 794.951 kb on - strandat 794.951 kb on - strandat 794.951 kb on - strandat 794.966 kb on + strandat 795.141 kb on + strandat 795.141 kb on + strandat 795.141 kb on + strandat 795.141 kb on + strandat 795.141 kb on + strandat 795.141 kb on + strandat 795.141 kb on + strandat 795.142 kb on - strand, within Pf1N1B4_696at 795.142 kb on - strand, within Pf1N1B4_696at 795.183 kb on + strand, within Pf1N1B4_696at 795.183 kb on + strand, within Pf1N1B4_696at 795.183 kb on + strand, within Pf1N1B4_696at 795.183 kb on + strand, within Pf1N1B4_696at 795.183 kb on + strand, within Pf1N1B4_696at 795.183 kb on + strand, within Pf1N1B4_696at 795.184 kb on - strand, within Pf1N1B4_696at 795.184 kb on - strand, within Pf1N1B4_696at 795.184 kb on - strand, within Pf1N1B4_696at 795.184 kb on - strand, within Pf1N1B4_696at 795.184 kb on - strand, within Pf1N1B4_696at 795.184 kb on - strand, within Pf1N1B4_696at 795.202 kb on - strand, within Pf1N1B4_696at 795.453 kb on + strand, within Pf1N1B4_696at 795.701 kb on - strand, within Pf1N1B4_696at 796.356 kb on + strand, within Pf1N1B4_696at 796.356 kb on + strand, within Pf1N1B4_696at 796.583 kb on + strandat 796.595 kb on + strandat 796.595 kb on + strandat 796.595 kb on + strandat 796.595 kb on + strandat 796.595 kb on + strandat 796.595 kb on + strandat 796.596 kb on - strandat 796.596 kb on - strandat 796.596 kb on - strandat 796.663 kb on + strandat 796.663 kb on + strandat 796.664 kb on - strandat 796.664 kb on - strandat 796.664 kb on - strandat 796.729 kb on + strandat 796.739 kb on + strandat 796.740 kb on - strandat 796.740 kb on - strandat 796.742 kb on + strandat 796.743 kb on - strandat 796.743 kb on - strandat 796.761 kb on + strandat 796.762 kb on - strandat 796.762 kb on - strandat 796.762 kb on - strandat 796.762 kb on - strandat 796.919 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.204 kb on + strand, within Pf1N1B4_697at 797.205 kb on - strand, within Pf1N1B4_697at 797.567 kb on + strand, within Pf1N1B4_697at 797.570 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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794,196 + Pf1N1B4_695 0.46 +0.7
794,450 + Pf1N1B4_695 0.63 +1.3
794,457 + Pf1N1B4_695 0.64 -1.3
794,641 + +1.9
794,642 - Pf1N1B4_695 0.77 +1.6
794,645 - Pf1N1B4_695 0.77 +2.5
794,645 - Pf1N1B4_695 0.77 +3.2
794,950 + -0.8
794,950 + +0.8
794,950 + +0.9
794,951 - +2.8
794,951 - +1.8
794,951 - +2.9
794,966 + +0.6
795,141 + +1.0
795,141 + +0.1
795,141 + -1.2
795,141 + -1.1
795,141 + +1.2
795,141 + +0.3
795,141 + +0.2
795,142 - Pf1N1B4_696 0.10 +2.5
795,142 - Pf1N1B4_696 0.10 +1.5
795,183 + Pf1N1B4_696 0.13 +0.3
795,183 + Pf1N1B4_696 0.13 +1.0
795,183 + Pf1N1B4_696 0.13 +0.7
795,183 + Pf1N1B4_696 0.13 +1.8
795,183 + Pf1N1B4_696 0.13 +0.7
795,183 + Pf1N1B4_696 0.13 +0.1
795,184 - Pf1N1B4_696 0.13 +2.3
795,184 - Pf1N1B4_696 0.13 +2.2
795,184 - Pf1N1B4_696 0.13 +2.6
795,184 - Pf1N1B4_696 0.13 +1.8
795,184 - Pf1N1B4_696 0.13 +1.9
795,184 - Pf1N1B4_696 0.13 +2.5
795,202 - Pf1N1B4_696 0.14 +2.3
795,453 + Pf1N1B4_696 0.29 -1.9
795,701 - Pf1N1B4_696 0.44 +2.9
796,356 + Pf1N1B4_696 0.84 -1.3
796,356 + Pf1N1B4_696 0.84 +0.0
796,583 + +0.3
796,595 + +0.7
796,595 + -1.2
796,595 + -0.0
796,595 + -0.3
796,595 + -1.2
796,595 + +1.4
796,596 - +1.2
796,596 - +1.6
796,596 - +0.3
796,663 + -2.4
796,663 + +1.1
796,664 - +2.3
796,664 - +3.7
796,664 - +5.0
796,729 + +0.6
796,739 + +2.3
796,740 - -0.4
796,740 - -0.1
796,742 + -0.6
796,743 - +0.4
796,743 - +0.9
796,761 + -0.8
796,762 - +0.8
796,762 - +1.4
796,762 - +0.4
796,762 - -0.6
796,919 + Pf1N1B4_697 0.16 -0.3
797,204 + Pf1N1B4_697 0.49 +0.4
797,204 + Pf1N1B4_697 0.49 -0.1
797,204 + Pf1N1B4_697 0.49 +0.6
797,204 + Pf1N1B4_697 0.49 -0.4
797,204 + Pf1N1B4_697 0.49 +0.5
797,204 + Pf1N1B4_697 0.49 +0.1
797,204 + Pf1N1B4_697 0.49 +0.2
797,204 + Pf1N1B4_697 0.49 -0.7
797,204 + Pf1N1B4_697 0.49 -2.0
797,204 + Pf1N1B4_697 0.49 +2.1
797,205 - Pf1N1B4_697 0.49 +0.7
797,567 + Pf1N1B4_697 0.90 +0.3
797,570 + +0.7

Or see this region's nucleotide sequence