Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5886 and Pf1N1B4_5887 are separated by 0 nucleotides Pf1N1B4_5887 and Pf1N1B4_5888 are separated by 22 nucleotides Pf1N1B4_5888 and Pf1N1B4_5889 are separated by 17 nucleotides
Pf1N1B4_5886 - Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6), at 329,719 to 330,465
_5886
Pf1N1B4_5887 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 330,466 to 331,110
_5887
Pf1N1B4_5888 - probable polysaccharide biosynthesis protein, at 331,133 to 332,155
_5888
Pf1N1B4_5889 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 332,173 to 333,768
_5889
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 330.266 kb on - strand, within Pf1N1B4_5886 at 330.298 kb on + strand, within Pf1N1B4_5886 at 330.379 kb on + strand, within Pf1N1B4_5886 at 330.380 kb on - strand, within Pf1N1B4_5886 at 330.380 kb on - strand, within Pf1N1B4_5886 at 330.380 kb on - strand, within Pf1N1B4_5886 at 331.075 kb on + strand at 331.078 kb on + strand at 331.078 kb on + strand at 331.078 kb on + strand at 331.078 kb on + strand at 331.079 kb on - strand at 331.204 kb on + strand at 331.736 kb on + strand, within Pf1N1B4_5888 at 331.737 kb on - strand, within Pf1N1B4_5888 at 331.836 kb on - strand, within Pf1N1B4_5888 at 332.031 kb on - strand, within Pf1N1B4_5888 at 332.031 kb on - strand, within Pf1N1B4_5888 at 332.153 kb on + strand at 332.569 kb on + strand, within Pf1N1B4_5889 at 332.570 kb on - strand, within Pf1N1B4_5889 at 332.641 kb on + strand, within Pf1N1B4_5889 at 332.641 kb on + strand, within Pf1N1B4_5889 at 332.642 kb on - strand at 332.711 kb on - strand at 332.711 kb on - strand, within Pf1N1B4_5889 at 332.818 kb on + strand, within Pf1N1B4_5889 at 332.972 kb on - strand, within Pf1N1B4_5889 at 333.042 kb on + strand, within Pf1N1B4_5889 at 333.043 kb on - strand, within Pf1N1B4_5889 at 333.043 kb on - strand, within Pf1N1B4_5889 at 333.062 kb on - strand, within Pf1N1B4_5889
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 330,266 - Pf1N1B4_5886 0.73 +0.0 330,298 + Pf1N1B4_5886 0.78 -0.8 330,379 + Pf1N1B4_5886 0.88 -0.8 330,380 - Pf1N1B4_5886 0.88 -0.3 330,380 - Pf1N1B4_5886 0.88 -0.0 330,380 - Pf1N1B4_5886 0.88 +0.7 331,075 + -0.4 331,078 + -1.7 331,078 + +0.4 331,078 + +0.9 331,078 + -0.3 331,079 - -0.4 331,204 + -1.9 331,736 + Pf1N1B4_5888 0.59 -0.7 331,737 - Pf1N1B4_5888 0.59 -0.4 331,836 - Pf1N1B4_5888 0.69 -0.6 332,031 - Pf1N1B4_5888 0.88 -2.8 332,031 - Pf1N1B4_5888 0.88 -1.0 332,153 + -0.6 332,569 + Pf1N1B4_5889 0.25 -0.1 332,570 - Pf1N1B4_5889 0.25 -1.4 332,641 + Pf1N1B4_5889 0.29 +0.3 332,641 + Pf1N1B4_5889 0.29 -0.8 332,642 - +0.2 332,711 - +0.6 332,711 - Pf1N1B4_5889 0.34 -0.3 332,818 + Pf1N1B4_5889 0.40 +0.2 332,972 - Pf1N1B4_5889 0.50 -1.3 333,042 + Pf1N1B4_5889 0.54 -0.2 333,043 - Pf1N1B4_5889 0.55 +0.0 333,043 - Pf1N1B4_5889 0.55 +0.0 333,062 - Pf1N1B4_5889 0.56 -0.1
Or see this region's nucleotide sequence