Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_527

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_525 and Pf1N1B4_526 are separated by 9 nucleotidesPf1N1B4_526 and Pf1N1B4_527 are separated by 51 nucleotidesPf1N1B4_527 and Pf1N1B4_528 are separated by 175 nucleotides Pf1N1B4_525 - Agmatinase (EC 3.5.3.11), at 624,569 to 625,519 _525 Pf1N1B4_526 - Undecaprenyl pyrophosphate synthase, at 625,529 to 625,951 _526 Pf1N1B4_527 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 626,003 to 627,514 _527 Pf1N1B4_528 - sodium-solute symporter, putative, at 627,690 to 629,069 _528 Position (kb) 626 627 628Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 625.086 kb on + strand, within Pf1N1B4_525at 625.087 kb on - strand, within Pf1N1B4_525at 625.145 kb on + strand, within Pf1N1B4_525at 625.145 kb on + strand, within Pf1N1B4_525at 625.146 kb on - strand, within Pf1N1B4_525at 625.274 kb on + strand, within Pf1N1B4_525at 625.274 kb on + strand, within Pf1N1B4_525at 625.434 kb on - strandat 625.479 kb on - strandat 625.604 kb on + strand, within Pf1N1B4_526at 625.605 kb on - strand, within Pf1N1B4_526at 625.605 kb on - strand, within Pf1N1B4_526at 625.643 kb on + strand, within Pf1N1B4_526at 625.644 kb on - strandat 625.644 kb on - strand, within Pf1N1B4_526at 625.679 kb on + strand, within Pf1N1B4_526at 625.679 kb on + strand, within Pf1N1B4_526at 625.893 kb on + strand, within Pf1N1B4_526at 625.893 kb on + strand, within Pf1N1B4_526at 626.009 kb on - strandat 626.032 kb on + strandat 626.033 kb on - strandat 626.456 kb on + strand, within Pf1N1B4_527at 626.456 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.600 kb on + strand, within Pf1N1B4_527at 626.600 kb on + strand, within Pf1N1B4_527at 626.600 kb on + strand, within Pf1N1B4_527at 626.601 kb on - strand, within Pf1N1B4_527at 626.601 kb on - strand, within Pf1N1B4_527at 626.717 kb on + strand, within Pf1N1B4_527at 626.717 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.960 kb on + strand, within Pf1N1B4_527at 626.960 kb on + strand, within Pf1N1B4_527at 626.961 kb on - strand, within Pf1N1B4_527at 626.961 kb on - strand, within Pf1N1B4_527at 626.961 kb on - strand, within Pf1N1B4_527at 627.179 kb on + strand, within Pf1N1B4_527at 627.179 kb on + strand, within Pf1N1B4_527at 627.179 kb on + strandat 627.179 kb on + strand, within Pf1N1B4_527at 627.179 kb on + strand, within Pf1N1B4_527at 627.179 kb on + strand, within Pf1N1B4_527at 627.179 kb on + strand, within Pf1N1B4_527at 627.180 kb on - strand, within Pf1N1B4_527at 627.180 kb on - strand, within Pf1N1B4_527at 627.401 kb on + strandat 627.401 kb on + strandat 627.401 kb on + strandat 627.401 kb on + strandat 627.402 kb on - strandat 627.487 kb on + strandat 627.487 kb on + strandat 627.543 kb on + strandat 627.544 kb on - strandat 627.544 kb on - strandat 627.549 kb on + strandat 627.549 kb on + strandat 627.550 kb on - strandat 627.663 kb on - strandat 627.663 kb on - strandat 627.703 kb on + strandat 627.721 kb on - strandat 627.721 kb on - strandat 627.721 kb on - strandat 627.747 kb on + strandat 627.748 kb on - strandat 627.750 kb on + strandat 627.819 kb on + strandat 627.819 kb on + strandat 627.819 kb on + strandat 627.819 kb on + strandat 627.819 kb on + strandat 627.861 kb on - strand, within Pf1N1B4_528at 627.861 kb on - strand, within Pf1N1B4_528at 627.861 kb on - strand, within Pf1N1B4_528at 627.885 kb on + strand, within Pf1N1B4_528at 627.886 kb on - strand, within Pf1N1B4_528at 627.987 kb on + strand, within Pf1N1B4_528at 627.987 kb on + strand, within Pf1N1B4_528at 627.990 kb on - strand, within Pf1N1B4_528at 628.062 kb on + strand, within Pf1N1B4_528at 628.062 kb on + strand, within Pf1N1B4_528at 628.176 kb on + strand, within Pf1N1B4_528at 628.177 kb on - strand, within Pf1N1B4_528at 628.278 kb on + strand, within Pf1N1B4_528at 628.368 kb on + strand, within Pf1N1B4_528at 628.368 kb on + strand, within Pf1N1B4_528at 628.369 kb on - strand, within Pf1N1B4_528at 628.369 kb on - strand, within Pf1N1B4_528at 628.380 kb on + strandat 628.380 kb on + strand, within Pf1N1B4_528at 628.380 kb on + strandat 628.464 kb on - strand, within Pf1N1B4_528at 628.479 kb on + strand, within Pf1N1B4_528at 628.479 kb on + strand, within Pf1N1B4_528at 628.479 kb on + strand, within Pf1N1B4_528

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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625,086 + Pf1N1B4_525 0.54 -1.2
625,087 - Pf1N1B4_525 0.54 +0.3
625,145 + Pf1N1B4_525 0.61 +0.1
625,145 + Pf1N1B4_525 0.61 +2.2
625,146 - Pf1N1B4_525 0.61 +1.7
625,274 + Pf1N1B4_525 0.74 -2.5
625,274 + Pf1N1B4_525 0.74 -0.3
625,434 - -0.1
625,479 - +0.4
625,604 + Pf1N1B4_526 0.18 +2.4
625,605 - Pf1N1B4_526 0.18 +0.6
625,605 - Pf1N1B4_526 0.18 +0.1
625,643 + Pf1N1B4_526 0.27 +1.5
625,644 - -0.3
625,644 - Pf1N1B4_526 0.27 -0.1
625,679 + Pf1N1B4_526 0.35 +1.9
625,679 + Pf1N1B4_526 0.35 +1.2
625,893 + Pf1N1B4_526 0.86 +1.5
625,893 + Pf1N1B4_526 0.86 +0.2
626,009 - +0.2
626,032 + -2.4
626,033 - -1.0
626,456 + Pf1N1B4_527 0.30 +1.1
626,456 + Pf1N1B4_527 0.30 +0.5
626,495 + Pf1N1B4_527 0.33 -0.3
626,495 + Pf1N1B4_527 0.33 +1.2
626,495 + Pf1N1B4_527 0.33 -0.9
626,495 + Pf1N1B4_527 0.33 +1.2
626,495 + Pf1N1B4_527 0.33 +0.8
626,600 + Pf1N1B4_527 0.39 +1.2
626,600 + Pf1N1B4_527 0.39 +1.3
626,600 + Pf1N1B4_527 0.39 +0.6
626,601 - Pf1N1B4_527 0.40 +0.3
626,601 - Pf1N1B4_527 0.40 -2.4
626,717 + Pf1N1B4_527 0.47 +1.8
626,717 + Pf1N1B4_527 0.47 +1.8
626,861 + Pf1N1B4_527 0.57 +4.1
626,861 + Pf1N1B4_527 0.57 +2.5
626,861 + Pf1N1B4_527 0.57 +2.6
626,861 + Pf1N1B4_527 0.57 +1.8
626,861 + Pf1N1B4_527 0.57 +1.7
626,861 + Pf1N1B4_527 0.57 +2.2
626,862 - Pf1N1B4_527 0.57 +1.1
626,862 - Pf1N1B4_527 0.57 +1.8
626,862 - Pf1N1B4_527 0.57 -0.1
626,862 - Pf1N1B4_527 0.57 -0.5
626,862 - Pf1N1B4_527 0.57 -1.1
626,862 - Pf1N1B4_527 0.57 -1.4
626,862 - Pf1N1B4_527 0.57 +0.0
626,960 + Pf1N1B4_527 0.63 +2.3
626,960 + Pf1N1B4_527 0.63 +2.9
626,961 - Pf1N1B4_527 0.63 +0.5
626,961 - Pf1N1B4_527 0.63 +0.6
626,961 - Pf1N1B4_527 0.63 +0.4
627,179 + Pf1N1B4_527 0.78 +2.9
627,179 + Pf1N1B4_527 0.78 +2.3
627,179 + +1.1
627,179 + Pf1N1B4_527 0.78 +3.1
627,179 + Pf1N1B4_527 0.78 +4.0
627,179 + Pf1N1B4_527 0.78 +3.4
627,179 + Pf1N1B4_527 0.78 +3.8
627,180 - Pf1N1B4_527 0.78 -0.0
627,180 - Pf1N1B4_527 0.78 -0.2
627,401 + +3.7
627,401 + +3.2
627,401 + +3.0
627,401 + +2.6
627,402 - +1.2
627,487 + +2.1
627,487 + +3.4
627,543 + +4.0
627,544 - -0.4
627,544 - -1.2
627,549 + +2.4
627,549 + +4.5
627,550 - -0.2
627,663 - -1.1
627,663 - -0.2
627,703 + -1.0
627,721 - -0.4
627,721 - +1.0
627,721 - -1.8
627,747 + -0.7
627,748 - +0.8
627,750 + +1.5
627,819 + +0.8
627,819 + +0.0
627,819 + +0.2
627,819 + -1.4
627,819 + +1.0
627,861 - Pf1N1B4_528 0.12 +0.5
627,861 - Pf1N1B4_528 0.12 +0.9
627,861 - Pf1N1B4_528 0.12 -1.1
627,885 + Pf1N1B4_528 0.14 +0.8
627,886 - Pf1N1B4_528 0.14 +0.8
627,987 + Pf1N1B4_528 0.22 -0.5
627,987 + Pf1N1B4_528 0.22 -1.2
627,990 - Pf1N1B4_528 0.22 -0.6
628,062 + Pf1N1B4_528 0.27 -0.2
628,062 + Pf1N1B4_528 0.27 +1.3
628,176 + Pf1N1B4_528 0.35 -0.4
628,177 - Pf1N1B4_528 0.35 -0.3
628,278 + Pf1N1B4_528 0.43 +0.8
628,368 + Pf1N1B4_528 0.49 +0.2
628,368 + Pf1N1B4_528 0.49 -0.1
628,369 - Pf1N1B4_528 0.49 +0.2
628,369 - Pf1N1B4_528 0.49 -1.2
628,380 + -2.5
628,380 + Pf1N1B4_528 0.50 -1.4
628,380 + -1.4
628,464 - Pf1N1B4_528 0.56 -0.1
628,479 + Pf1N1B4_528 0.57 -1.0
628,479 + Pf1N1B4_528 0.57 -0.6
628,479 + Pf1N1B4_528 0.57 +0.2

Or see this region's nucleotide sequence