Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4286

Experiment: nitrogen source nitrite 0.5mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4285 and Pf1N1B4_4286 are separated by 54 nucleotidesPf1N1B4_4286 and Pf1N1B4_4287 are separated by 57 nucleotides Pf1N1B4_4285 - Inositol transport system sugar-binding protein, at 4,750,312 to 4,751,238 _4285 Pf1N1B4_4286 - Inositol transport system ATP-binding protein, at 4,751,293 to 4,752,873 _4286 Pf1N1B4_4287 - Inositol transport system permease protein, at 4,752,931 to 4,753,953 _4287 Position (kb) 4751 4752 4753Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4750.383 kb on + strandat 4750.432 kb on + strand, within Pf1N1B4_4285at 4750.535 kb on + strand, within Pf1N1B4_4285at 4750.645 kb on + strandat 4750.645 kb on + strand, within Pf1N1B4_4285at 4750.645 kb on + strand, within Pf1N1B4_4285at 4750.739 kb on - strand, within Pf1N1B4_4285at 4750.849 kb on + strand, within Pf1N1B4_4285at 4751.236 kb on + strandat 4751.237 kb on - strandat 4751.261 kb on + strandat 4751.261 kb on + strandat 4751.262 kb on - strandat 4751.262 kb on - strandat 4751.262 kb on - strandat 4751.299 kb on + strandat 4751.383 kb on + strandat 4751.536 kb on + strand, within Pf1N1B4_4286at 4751.849 kb on - strand, within Pf1N1B4_4286at 4751.962 kb on + strand, within Pf1N1B4_4286at 4751.962 kb on + strand, within Pf1N1B4_4286at 4751.962 kb on + strand, within Pf1N1B4_4286at 4751.962 kb on + strand, within Pf1N1B4_4286at 4751.962 kb on + strand, within Pf1N1B4_4286at 4751.963 kb on - strand, within Pf1N1B4_4286at 4751.963 kb on - strand, within Pf1N1B4_4286at 4751.963 kb on - strand, within Pf1N1B4_4286at 4752.031 kb on + strand, within Pf1N1B4_4286at 4752.031 kb on + strand, within Pf1N1B4_4286at 4752.031 kb on + strand, within Pf1N1B4_4286at 4752.032 kb on - strand, within Pf1N1B4_4286at 4752.032 kb on - strandat 4752.454 kb on + strandat 4752.497 kb on + strand, within Pf1N1B4_4286at 4752.498 kb on - strand, within Pf1N1B4_4286at 4752.680 kb on - strand, within Pf1N1B4_4286at 4752.687 kb on + strand, within Pf1N1B4_4286at 4752.687 kb on + strand, within Pf1N1B4_4286at 4752.687 kb on + strand, within Pf1N1B4_4286at 4752.687 kb on + strand, within Pf1N1B4_4286at 4752.687 kb on + strand, within Pf1N1B4_4286at 4752.694 kb on + strand, within Pf1N1B4_4286at 4752.694 kb on + strand, within Pf1N1B4_4286at 4752.750 kb on - strandat 4752.914 kb on + strandat 4752.914 kb on + strandat 4752.914 kb on + strandat 4752.915 kb on - strandat 4753.005 kb on + strandat 4753.005 kb on + strandat 4753.005 kb on + strandat 4753.426 kb on + strand, within Pf1N1B4_4287at 4753.427 kb on - strand, within Pf1N1B4_4287at 4753.552 kb on + strand, within Pf1N1B4_4287at 4753.553 kb on - strand, within Pf1N1B4_4287at 4753.561 kb on + strand, within Pf1N1B4_4287at 4753.561 kb on + strand, within Pf1N1B4_4287at 4753.561 kb on + strand, within Pf1N1B4_4287at 4753.562 kb on - strand, within Pf1N1B4_4287at 4753.562 kb on - strand, within Pf1N1B4_4287at 4753.562 kb on - strand, within Pf1N1B4_4287at 4753.562 kb on - strand, within Pf1N1B4_4287at 4753.562 kb on - strand, within Pf1N1B4_4287at 4753.568 kb on - strand, within Pf1N1B4_4287at 4753.639 kb on + strand, within Pf1N1B4_4287at 4753.726 kb on + strand, within Pf1N1B4_4287at 4753.727 kb on - strand, within Pf1N1B4_4287at 4753.727 kb on - strand, within Pf1N1B4_4287at 4753.727 kb on - strand, within Pf1N1B4_4287at 4753.846 kb on - strand, within Pf1N1B4_4287at 4753.867 kb on + strandat 4753.867 kb on + strandat 4753.868 kb on - strandat 4753.868 kb on - strandat 4753.868 kb on - strandat 4753.868 kb on - strandat 4753.869 kb on + strandat 4753.869 kb on + strandat 4753.869 kb on + strandat 4753.870 kb on - strandat 4753.870 kb on - strandat 4753.870 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
remove
4,750,383 + +2.4
4,750,432 + Pf1N1B4_4285 0.13 -1.0
4,750,535 + Pf1N1B4_4285 0.24 -1.5
4,750,645 + -0.7
4,750,645 + Pf1N1B4_4285 0.36 -3.5
4,750,645 + Pf1N1B4_4285 0.36 +0.6
4,750,739 - Pf1N1B4_4285 0.46 -2.5
4,750,849 + Pf1N1B4_4285 0.58 -0.3
4,751,236 + -0.1
4,751,237 - -0.2
4,751,261 + +0.5
4,751,261 + +0.9
4,751,262 - +0.2
4,751,262 - -1.9
4,751,262 - +1.1
4,751,299 + -0.9
4,751,383 + -0.4
4,751,536 + Pf1N1B4_4286 0.15 -0.4
4,751,849 - Pf1N1B4_4286 0.35 -2.8
4,751,962 + Pf1N1B4_4286 0.42 -0.9
4,751,962 + Pf1N1B4_4286 0.42 +0.3
4,751,962 + Pf1N1B4_4286 0.42 -0.6
4,751,962 + Pf1N1B4_4286 0.42 +0.4
4,751,962 + Pf1N1B4_4286 0.42 -1.2
4,751,963 - Pf1N1B4_4286 0.42 +0.3
4,751,963 - Pf1N1B4_4286 0.42 -0.4
4,751,963 - Pf1N1B4_4286 0.42 -0.1
4,752,031 + Pf1N1B4_4286 0.47 +1.8
4,752,031 + Pf1N1B4_4286 0.47 -0.2
4,752,031 + Pf1N1B4_4286 0.47 +0.3
4,752,032 - Pf1N1B4_4286 0.47 -1.4
4,752,032 - -1.4
4,752,454 + +0.2
4,752,497 + Pf1N1B4_4286 0.76 -0.8
4,752,498 - Pf1N1B4_4286 0.76 -2.6
4,752,680 - Pf1N1B4_4286 0.88 -0.3
4,752,687 + Pf1N1B4_4286 0.88 -1.0
4,752,687 + Pf1N1B4_4286 0.88 -2.1
4,752,687 + Pf1N1B4_4286 0.88 +0.9
4,752,687 + Pf1N1B4_4286 0.88 -0.8
4,752,687 + Pf1N1B4_4286 0.88 -1.9
4,752,694 + Pf1N1B4_4286 0.89 -0.7
4,752,694 + Pf1N1B4_4286 0.89 +0.7
4,752,750 - +0.2
4,752,914 + -0.2
4,752,914 + +0.2
4,752,914 + +0.2
4,752,915 - -0.1
4,753,005 + -2.1
4,753,005 + +0.9
4,753,005 + +3.0
4,753,426 + Pf1N1B4_4287 0.48 +0.4
4,753,427 - Pf1N1B4_4287 0.48 +0.7
4,753,552 + Pf1N1B4_4287 0.61 +0.5
4,753,553 - Pf1N1B4_4287 0.61 +0.6
4,753,561 + Pf1N1B4_4287 0.62 +0.0
4,753,561 + Pf1N1B4_4287 0.62 -0.2
4,753,561 + Pf1N1B4_4287 0.62 -0.2
4,753,562 - Pf1N1B4_4287 0.62 +0.2
4,753,562 - Pf1N1B4_4287 0.62 +0.4
4,753,562 - Pf1N1B4_4287 0.62 +1.1
4,753,562 - Pf1N1B4_4287 0.62 -1.0
4,753,562 - Pf1N1B4_4287 0.62 +0.6
4,753,568 - Pf1N1B4_4287 0.62 -0.1
4,753,639 + Pf1N1B4_4287 0.69 -1.6
4,753,726 + Pf1N1B4_4287 0.78 -0.0
4,753,727 - Pf1N1B4_4287 0.78 -0.8
4,753,727 - Pf1N1B4_4287 0.78 -0.9
4,753,727 - Pf1N1B4_4287 0.78 -3.1
4,753,846 - Pf1N1B4_4287 0.89 -1.2
4,753,867 + -0.8
4,753,867 + +0.1
4,753,868 - -1.2
4,753,868 - -0.4
4,753,868 - -0.7
4,753,868 - -2.2
4,753,869 + -0.1
4,753,869 + +0.9
4,753,869 + -0.3
4,753,870 - +0.1
4,753,870 - +0.1
4,753,870 - -0.9

Or see this region's nucleotide sequence