Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3760 and Pf1N1B4_3761 are separated by 161 nucleotides Pf1N1B4_3761 and Pf1N1B4_3762 are separated by 165 nucleotides
Pf1N1B4_3760 - Nucleoside-binding outer membrane protein, at 4,172,017 to 4,172,802
_3760
Pf1N1B4_3761 - Xanthine permease, at 4,172,964 to 4,173,167
_3761
Pf1N1B4_3762 - FIG137887: membrane protein related to purine degradation, at 4,173,333 to 4,174,562
_3762
Position (kb)
4172
4173
4174 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4172.018 kb on + strand at 4172.090 kb on + strand at 4172.105 kb on + strand at 4172.106 kb on - strand, within Pf1N1B4_3760 at 4172.168 kb on + strand, within Pf1N1B4_3760 at 4172.249 kb on + strand, within Pf1N1B4_3760 at 4172.291 kb on + strand, within Pf1N1B4_3760 at 4172.292 kb on - strand, within Pf1N1B4_3760 at 4172.375 kb on + strand, within Pf1N1B4_3760 at 4172.375 kb on + strand, within Pf1N1B4_3760 at 4172.375 kb on + strand, within Pf1N1B4_3760 at 4172.375 kb on + strand, within Pf1N1B4_3760 at 4172.376 kb on - strand, within Pf1N1B4_3760 at 4172.420 kb on + strand, within Pf1N1B4_3760 at 4172.420 kb on + strand, within Pf1N1B4_3760 at 4172.421 kb on - strand, within Pf1N1B4_3760 at 4172.421 kb on - strand at 4172.450 kb on + strand, within Pf1N1B4_3760 at 4172.451 kb on - strand, within Pf1N1B4_3760 at 4172.467 kb on + strand at 4172.467 kb on + strand, within Pf1N1B4_3760 at 4172.467 kb on + strand, within Pf1N1B4_3760 at 4172.467 kb on + strand, within Pf1N1B4_3760 at 4172.467 kb on + strand, within Pf1N1B4_3760 at 4172.468 kb on - strand, within Pf1N1B4_3760 at 4172.468 kb on - strand, within Pf1N1B4_3760 at 4172.506 kb on + strand, within Pf1N1B4_3760 at 4172.543 kb on + strand, within Pf1N1B4_3760 at 4172.543 kb on + strand, within Pf1N1B4_3760 at 4172.585 kb on + strand at 4172.585 kb on + strand, within Pf1N1B4_3760 at 4172.586 kb on - strand, within Pf1N1B4_3760 at 4172.699 kb on + strand, within Pf1N1B4_3760 at 4172.699 kb on + strand, within Pf1N1B4_3760 at 4172.699 kb on + strand, within Pf1N1B4_3760 at 4172.728 kb on + strand at 4172.728 kb on + strand at 4172.728 kb on + strand at 4172.728 kb on + strand at 4172.728 kb on + strand at 4172.729 kb on - strand at 4172.729 kb on - strand at 4172.823 kb on + strand at 4172.911 kb on + strand at 4173.206 kb on - strand at 4173.703 kb on + strand, within Pf1N1B4_3762 at 4173.703 kb on + strand, within Pf1N1B4_3762 at 4173.703 kb on + strand, within Pf1N1B4_3762 at 4173.781 kb on + strand, within Pf1N1B4_3762 at 4173.782 kb on - strand, within Pf1N1B4_3762 at 4173.782 kb on - strand, within Pf1N1B4_3762 at 4173.835 kb on + strand, within Pf1N1B4_3762 at 4173.835 kb on + strand, within Pf1N1B4_3762 at 4173.836 kb on - strand, within Pf1N1B4_3762 at 4173.836 kb on - strand, within Pf1N1B4_3762 at 4173.836 kb on - strand, within Pf1N1B4_3762 at 4173.847 kb on + strand, within Pf1N1B4_3762 at 4173.847 kb on + strand, within Pf1N1B4_3762 at 4173.848 kb on - strand, within Pf1N1B4_3762 at 4173.901 kb on + strand, within Pf1N1B4_3762 at 4173.901 kb on + strand, within Pf1N1B4_3762 at 4173.901 kb on + strand, within Pf1N1B4_3762 at 4173.901 kb on + strand, within Pf1N1B4_3762 at 4173.901 kb on + strand, within Pf1N1B4_3762 at 4173.902 kb on - strand, within Pf1N1B4_3762 at 4173.902 kb on - strand at 4174.096 kb on + strand, within Pf1N1B4_3762
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 4,172,018 + -0.4 4,172,090 + -1.0 4,172,105 + +0.9 4,172,106 - Pf1N1B4_3760 0.11 +0.7 4,172,168 + Pf1N1B4_3760 0.19 +0.7 4,172,249 + Pf1N1B4_3760 0.30 -0.9 4,172,291 + Pf1N1B4_3760 0.35 +0.9 4,172,292 - Pf1N1B4_3760 0.35 -1.4 4,172,375 + Pf1N1B4_3760 0.46 -1.5 4,172,375 + Pf1N1B4_3760 0.46 -0.3 4,172,375 + Pf1N1B4_3760 0.46 -1.1 4,172,375 + Pf1N1B4_3760 0.46 +0.9 4,172,376 - Pf1N1B4_3760 0.46 +1.5 4,172,420 + Pf1N1B4_3760 0.51 -0.1 4,172,420 + Pf1N1B4_3760 0.51 -0.8 4,172,421 - Pf1N1B4_3760 0.51 +1.3 4,172,421 - +0.3 4,172,450 + Pf1N1B4_3760 0.55 +0.1 4,172,451 - Pf1N1B4_3760 0.55 +1.4 4,172,467 + -1.0 4,172,467 + Pf1N1B4_3760 0.57 +0.4 4,172,467 + Pf1N1B4_3760 0.57 -1.2 4,172,467 + Pf1N1B4_3760 0.57 -0.3 4,172,467 + Pf1N1B4_3760 0.57 +1.0 4,172,468 - Pf1N1B4_3760 0.57 -0.2 4,172,468 - Pf1N1B4_3760 0.57 -2.7 4,172,506 + Pf1N1B4_3760 0.62 -0.2 4,172,543 + Pf1N1B4_3760 0.67 +1.4 4,172,543 + Pf1N1B4_3760 0.67 -0.2 4,172,585 + -2.0 4,172,585 + Pf1N1B4_3760 0.72 -0.3 4,172,586 - Pf1N1B4_3760 0.72 -2.0 4,172,699 + Pf1N1B4_3760 0.87 -1.8 4,172,699 + Pf1N1B4_3760 0.87 +0.5 4,172,699 + Pf1N1B4_3760 0.87 -2.8 4,172,728 + -0.6 4,172,728 + -1.5 4,172,728 + +1.2 4,172,728 + -0.4 4,172,728 + +0.9 4,172,729 - +0.5 4,172,729 - +0.8 4,172,823 + +0.6 4,172,911 + +0.4 4,173,206 - -0.0 4,173,703 + Pf1N1B4_3762 0.30 +1.5 4,173,703 + Pf1N1B4_3762 0.30 -1.2 4,173,703 + Pf1N1B4_3762 0.30 +0.2 4,173,781 + Pf1N1B4_3762 0.36 -0.9 4,173,782 - Pf1N1B4_3762 0.37 -0.7 4,173,782 - Pf1N1B4_3762 0.37 -0.9 4,173,835 + Pf1N1B4_3762 0.41 -0.4 4,173,835 + Pf1N1B4_3762 0.41 +0.5 4,173,836 - Pf1N1B4_3762 0.41 -1.1 4,173,836 - Pf1N1B4_3762 0.41 +0.5 4,173,836 - Pf1N1B4_3762 0.41 -1.0 4,173,847 + Pf1N1B4_3762 0.42 -0.3 4,173,847 + Pf1N1B4_3762 0.42 +2.7 4,173,848 - Pf1N1B4_3762 0.42 +0.8 4,173,901 + Pf1N1B4_3762 0.46 -2.6 4,173,901 + Pf1N1B4_3762 0.46 -0.6 4,173,901 + Pf1N1B4_3762 0.46 +0.1 4,173,901 + Pf1N1B4_3762 0.46 -0.6 4,173,901 + Pf1N1B4_3762 0.46 +0.5 4,173,902 - Pf1N1B4_3762 0.46 -1.3 4,173,902 - -0.6 4,174,096 + Pf1N1B4_3762 0.62 +0.1
Or see this region's nucleotide sequence