Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3761

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3760 and Pf1N1B4_3761 are separated by 161 nucleotidesPf1N1B4_3761 and Pf1N1B4_3762 are separated by 165 nucleotides Pf1N1B4_3760 - Nucleoside-binding outer membrane protein, at 4,172,017 to 4,172,802 _3760 Pf1N1B4_3761 - Xanthine permease, at 4,172,964 to 4,173,167 _3761 Pf1N1B4_3762 - FIG137887: membrane protein related to purine degradation, at 4,173,333 to 4,174,562 _3762 Position (kb) 4172 4173 4174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4172.018 kb on + strandat 4172.090 kb on + strandat 4172.105 kb on + strandat 4172.106 kb on - strand, within Pf1N1B4_3760at 4172.168 kb on + strand, within Pf1N1B4_3760at 4172.249 kb on + strand, within Pf1N1B4_3760at 4172.291 kb on + strand, within Pf1N1B4_3760at 4172.292 kb on - strand, within Pf1N1B4_3760at 4172.375 kb on + strand, within Pf1N1B4_3760at 4172.375 kb on + strand, within Pf1N1B4_3760at 4172.375 kb on + strand, within Pf1N1B4_3760at 4172.375 kb on + strand, within Pf1N1B4_3760at 4172.376 kb on - strand, within Pf1N1B4_3760at 4172.420 kb on + strand, within Pf1N1B4_3760at 4172.420 kb on + strand, within Pf1N1B4_3760at 4172.421 kb on - strand, within Pf1N1B4_3760at 4172.421 kb on - strandat 4172.450 kb on + strand, within Pf1N1B4_3760at 4172.451 kb on - strand, within Pf1N1B4_3760at 4172.467 kb on + strandat 4172.467 kb on + strand, within Pf1N1B4_3760at 4172.467 kb on + strand, within Pf1N1B4_3760at 4172.467 kb on + strand, within Pf1N1B4_3760at 4172.467 kb on + strand, within Pf1N1B4_3760at 4172.468 kb on - strand, within Pf1N1B4_3760at 4172.468 kb on - strand, within Pf1N1B4_3760at 4172.506 kb on + strand, within Pf1N1B4_3760at 4172.543 kb on + strand, within Pf1N1B4_3760at 4172.543 kb on + strand, within Pf1N1B4_3760at 4172.585 kb on + strandat 4172.585 kb on + strand, within Pf1N1B4_3760at 4172.586 kb on - strand, within Pf1N1B4_3760at 4172.699 kb on + strand, within Pf1N1B4_3760at 4172.699 kb on + strand, within Pf1N1B4_3760at 4172.699 kb on + strand, within Pf1N1B4_3760at 4172.728 kb on + strandat 4172.728 kb on + strandat 4172.728 kb on + strandat 4172.728 kb on + strandat 4172.728 kb on + strandat 4172.729 kb on - strandat 4172.729 kb on - strandat 4172.823 kb on + strandat 4172.911 kb on + strandat 4173.206 kb on - strandat 4173.703 kb on + strand, within Pf1N1B4_3762at 4173.703 kb on + strand, within Pf1N1B4_3762at 4173.703 kb on + strand, within Pf1N1B4_3762at 4173.781 kb on + strand, within Pf1N1B4_3762at 4173.782 kb on - strand, within Pf1N1B4_3762at 4173.782 kb on - strand, within Pf1N1B4_3762at 4173.835 kb on + strand, within Pf1N1B4_3762at 4173.835 kb on + strand, within Pf1N1B4_3762at 4173.836 kb on - strand, within Pf1N1B4_3762at 4173.836 kb on - strand, within Pf1N1B4_3762at 4173.836 kb on - strand, within Pf1N1B4_3762at 4173.847 kb on + strand, within Pf1N1B4_3762at 4173.847 kb on + strand, within Pf1N1B4_3762at 4173.848 kb on - strand, within Pf1N1B4_3762at 4173.901 kb on + strand, within Pf1N1B4_3762at 4173.901 kb on + strand, within Pf1N1B4_3762at 4173.901 kb on + strand, within Pf1N1B4_3762at 4173.901 kb on + strand, within Pf1N1B4_3762at 4173.901 kb on + strand, within Pf1N1B4_3762at 4173.902 kb on - strand, within Pf1N1B4_3762at 4173.902 kb on - strandat 4174.096 kb on + strand, within Pf1N1B4_3762

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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4,172,018 + -0.4
4,172,090 + -1.0
4,172,105 + +0.9
4,172,106 - Pf1N1B4_3760 0.11 +0.7
4,172,168 + Pf1N1B4_3760 0.19 +0.7
4,172,249 + Pf1N1B4_3760 0.30 -0.9
4,172,291 + Pf1N1B4_3760 0.35 +0.9
4,172,292 - Pf1N1B4_3760 0.35 -1.4
4,172,375 + Pf1N1B4_3760 0.46 -1.5
4,172,375 + Pf1N1B4_3760 0.46 -0.3
4,172,375 + Pf1N1B4_3760 0.46 -1.1
4,172,375 + Pf1N1B4_3760 0.46 +0.9
4,172,376 - Pf1N1B4_3760 0.46 +1.5
4,172,420 + Pf1N1B4_3760 0.51 -0.1
4,172,420 + Pf1N1B4_3760 0.51 -0.8
4,172,421 - Pf1N1B4_3760 0.51 +1.3
4,172,421 - +0.3
4,172,450 + Pf1N1B4_3760 0.55 +0.1
4,172,451 - Pf1N1B4_3760 0.55 +1.4
4,172,467 + -1.0
4,172,467 + Pf1N1B4_3760 0.57 +0.4
4,172,467 + Pf1N1B4_3760 0.57 -1.2
4,172,467 + Pf1N1B4_3760 0.57 -0.3
4,172,467 + Pf1N1B4_3760 0.57 +1.0
4,172,468 - Pf1N1B4_3760 0.57 -0.2
4,172,468 - Pf1N1B4_3760 0.57 -2.7
4,172,506 + Pf1N1B4_3760 0.62 -0.2
4,172,543 + Pf1N1B4_3760 0.67 +1.4
4,172,543 + Pf1N1B4_3760 0.67 -0.2
4,172,585 + -2.0
4,172,585 + Pf1N1B4_3760 0.72 -0.3
4,172,586 - Pf1N1B4_3760 0.72 -2.0
4,172,699 + Pf1N1B4_3760 0.87 -1.8
4,172,699 + Pf1N1B4_3760 0.87 +0.5
4,172,699 + Pf1N1B4_3760 0.87 -2.8
4,172,728 + -0.6
4,172,728 + -1.5
4,172,728 + +1.2
4,172,728 + -0.4
4,172,728 + +0.9
4,172,729 - +0.5
4,172,729 - +0.8
4,172,823 + +0.6
4,172,911 + +0.4
4,173,206 - -0.0
4,173,703 + Pf1N1B4_3762 0.30 +1.5
4,173,703 + Pf1N1B4_3762 0.30 -1.2
4,173,703 + Pf1N1B4_3762 0.30 +0.2
4,173,781 + Pf1N1B4_3762 0.36 -0.9
4,173,782 - Pf1N1B4_3762 0.37 -0.7
4,173,782 - Pf1N1B4_3762 0.37 -0.9
4,173,835 + Pf1N1B4_3762 0.41 -0.4
4,173,835 + Pf1N1B4_3762 0.41 +0.5
4,173,836 - Pf1N1B4_3762 0.41 -1.1
4,173,836 - Pf1N1B4_3762 0.41 +0.5
4,173,836 - Pf1N1B4_3762 0.41 -1.0
4,173,847 + Pf1N1B4_3762 0.42 -0.3
4,173,847 + Pf1N1B4_3762 0.42 +2.7
4,173,848 - Pf1N1B4_3762 0.42 +0.8
4,173,901 + Pf1N1B4_3762 0.46 -2.6
4,173,901 + Pf1N1B4_3762 0.46 -0.6
4,173,901 + Pf1N1B4_3762 0.46 +0.1
4,173,901 + Pf1N1B4_3762 0.46 -0.6
4,173,901 + Pf1N1B4_3762 0.46 +0.5
4,173,902 - Pf1N1B4_3762 0.46 -1.3
4,173,902 - -0.6
4,174,096 + Pf1N1B4_3762 0.62 +0.1

Or see this region's nucleotide sequence