Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2167

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
2,480,294	+				+2.1
2,480,294	+				-0.0
2,480,294	+				-0.6
2,480,294	+				+1.4
2,480,294	+				-0.6
2,480,294	+				+0.6
2,480,294	+				+1.4
2,480,295	-				+0.1
2,480,295	-				-2.6
2,480,308	+				+0.8
2,480,308	+				+1.2
2,480,308	+				+0.3
2,480,308	+				+0.4
2,480,308	+				+0.5
2,480,308	+				-0.2
2,480,308	+				+1.4
2,480,308	+				+0.0
2,480,308	+				+1.2
2,480,308	+				+0.4
2,480,308	+				+0.4
2,480,309	-				-2.0
2,480,309	-				+0.1
2,480,310	+				+0.4
2,480,310	+				+0.3
2,480,311	-				-0.7
2,480,453	-				-0.1
2,480,560	-				-0.2
2,480,620	+				-0.5
2,480,620	+				+0.4
2,480,620	+				+0.6
2,481,015	+				-0.0
2,481,016	-				-0.5
2,481,052	+				-0.9
2,481,052	+				-0.0
2,481,052	+				-0.6
2,481,052	+				+0.3
2,481,053	-				-0.8
2,481,078	+				-1.1
2,481,228	-		Pf1N1B4_2167	0.13	+0.2
2,481,317	+		Pf1N1B4_2167	0.20	-0.3
2,481,317	+		Pf1N1B4_2167	0.20	-2.7
2,481,317	+		Pf1N1B4_2167	0.20	-2.9
2,481,317	+		Pf1N1B4_2167	0.20	-1.3
2,481,317	+		Pf1N1B4_2167	0.20	-1.5
2,481,318	-		Pf1N1B4_2167	0.20	-0.7
2,481,318	-		Pf1N1B4_2167	0.20	-0.6
2,481,323	+		Pf1N1B4_2167	0.20	-2.3
2,481,587	+				+1.4
2,481,587	+		Pf1N1B4_2167	0.40	-1.3
2,481,587	+		Pf1N1B4_2167	0.40	-1.5
2,481,587	+		Pf1N1B4_2167	0.40	-0.3
2,481,588	-		Pf1N1B4_2167	0.40	-2.8
2,481,588	-		Pf1N1B4_2167	0.40	-1.7
2,481,588	-		Pf1N1B4_2167	0.40	-1.4
2,481,773	+		Pf1N1B4_2167	0.54	+1.1
2,481,774	-		Pf1N1B4_2167	0.54	-3.1
2,481,870	+		Pf1N1B4_2167	0.61	-3.0
2,481,870	+		Pf1N1B4_2167	0.61	-1.9
2,481,870	+		Pf1N1B4_2167	0.61	-3.7
2,481,871	-		Pf1N1B4_2167	0.61	-1.2
2,481,871	-		Pf1N1B4_2167	0.61	-2.3
2,482,262	+				-1.6
2,482,262	+				-1.6
2,482,262	+				-3.0
2,482,262	+				-2.0
2,482,262	+				+0.1
2,482,263	-				-2.0
2,482,263	-				-0.4
2,482,263	-				-2.8
2,482,282	+				-2.2
2,482,321	+				-1.0
2,482,388	+				-1.1
2,482,388	+				-1.2
2,482,388	+				-0.6
2,482,388	+				+1.2
2,482,389	-				-0.6
2,482,389	-				+0.5
2,482,389	-				-0.6
2,482,389	-				-1.1
2,482,389	-				-1.9
2,482,389	-				-1.9
2,482,527	-				-0.6
2,482,527	-				+0.3
2,482,542	+				+0.6
2,482,542	+				-1.0
2,482,543	-				-1.3
2,482,543	-				+0.9
2,482,543	-				-0.6
2,482,543	-				-1.2
2,482,543	-				+0.2
2,482,543	-				+1.0
2,482,574	+				+0.5
2,482,574	+				+0.7
2,482,604	+				+1.9
2,482,604	+				-0.5
2,482,604	+				+1.4
2,482,604	+				-0.6
2,482,605	-				+1.0
2,482,605	-				+0.7
2,482,605	-				-0.4
2,482,605	-				-1.5
2,482,605	-				-0.1
2,482,605	-				-0.8
2,482,605	-				+0.8
2,482,605	-				+1.7
2,482,605	-				+1.0
2,482,605	-				+0.4
2,482,605	-				-0.4
2,482,605	-				-0.5
2,482,605	-				-0.7
2,482,605	-				+1.4
2,482,605	-				-0.1
2,482,605	-				-2.7
2,482,605	-				+0.4
2,482,605	-				-1.9
2,482,605	-				+0.5
2,482,605	-				-0.3
2,482,605	-				-0.6
2,482,605	-				-1.5
2,482,673	-		Pf1N1B4_2168	0.16	+1.0
2,482,673	-		Pf1N1B4_2168	0.16	-1.7
2,482,673	-		Pf1N1B4_2168	0.16	-0.4
2,482,673	-		Pf1N1B4_2168	0.16	-1.8
2,482,673	-		Pf1N1B4_2168	0.16	-0.0
2,482,729	+		Pf1N1B4_2168	0.29	+0.0
2,482,736	+		Pf1N1B4_2168	0.31	-1.9
2,482,737	-		Pf1N1B4_2168	0.31	+0.2
2,482,737	-		Pf1N1B4_2168	0.31	+0.2
2,482,737	-		Pf1N1B4_2168	0.31	-2.2
2,482,737	-		Pf1N1B4_2168	0.31	-2.2
2,482,737	-		Pf1N1B4_2168	0.31	+0.9
2,482,737	-		Pf1N1B4_2168	0.31	-2.3
2,482,737	-		Pf1N1B4_2168	0.31	-0.9
2,482,737	-		Pf1N1B4_2168	0.31	+0.2
2,482,737	-		Pf1N1B4_2168	0.31	-1.5
2,482,737	-		Pf1N1B4_2168	0.31	+0.3
2,482,737	-		Pf1N1B4_2168	0.31	-0.5
2,482,737	-		Pf1N1B4_2168	0.31	+0.6
2,482,737	-		Pf1N1B4_2168	0.31	+0.3
2,482,781	-				+0.8
2,482,781	-		Pf1N1B4_2168	0.41	-0.9
2,482,837	-		Pf1N1B4_2168	0.54	-0.2
2,482,845	-		Pf1N1B4_2168	0.56	-1.5
2,482,845	-		Pf1N1B4_2168	0.56	-1.1
2,482,891	+		Pf1N1B4_2168	0.67	+0.8
2,482,891	+		Pf1N1B4_2168	0.67	-0.2
2,482,891	+				-2.2
2,482,892	-				-2.1
2,482,892	-		Pf1N1B4_2168	0.67	+1.2
2,482,892	-		Pf1N1B4_2168	0.67	-0.6
2,482,892	-		Pf1N1B4_2168	0.67	+1.0
2,482,892	-		Pf1N1B4_2168	0.67	-1.2
2,482,892	-		Pf1N1B4_2168	0.67	-1.5
2,482,892	-		Pf1N1B4_2168	0.67	-0.4
2,482,892	-		Pf1N1B4_2168	0.67	+0.3
2,482,959	+		Pf1N1B4_2168	0.83	+0.4
2,482,960	-		Pf1N1B4_2168	0.83	-3.4
2,482,960	-		Pf1N1B4_2168	0.83	+0.4
2,482,960	-		Pf1N1B4_2168	0.83	+0.5
2,482,960	-		Pf1N1B4_2168	0.83	-0.3
2,482,960	-		Pf1N1B4_2168	0.83	+0.1
2,482,995	-				+2.0
2,483,098	-				+0.8
2,483,099	+				-0.5
2,483,099	+				+0.5
2,483,099	+				+0.4
2,483,099	+				-0.2
2,483,099	+				+0.7
2,483,100	-				-0.7
2,483,100	-				+0.5
2,483,100	-				-2.0
2,483,100	-				-0.1
2,483,100	-				+1.4
2,483,100	-				+0.2
2,483,100	-				+0.8
2,483,100	-				-0.3
2,483,100	-				+1.6
2,483,100	-				-0.2
2,483,100	-				-1.5
2,483,100	-				-0.0
2,483,103	+				-2.7
2,483,103	+				+1.0
2,483,103	+				+0.6
2,483,103	+				-0.3
2,483,103	+				-0.8
2,483,103	+				-0.6
2,483,104	-				-0.6
2,483,104	-				-0.3
2,483,104	-				-0.8
2,483,104	-				-1.5
2,483,104	-				+1.1
2,483,104	-				-0.5
2,483,104	-				-1.1
2,483,104	-				-1.7
2,483,104	-				-1.0
2,483,104	-				-2.0
2,483,104	-				+0.2
2,483,129	+				-0.6
2,483,129	+				-1.9
2,483,129	+				-0.2
2,483,129	+				-0.5
2,483,129	+				-1.4
2,483,129	+				+1.1
2,483,129	+				+2.0
2,483,129	+				-1.7
2,483,129	+				-0.2
2,483,129	+				+0.4
2,483,129	+				+0.7
2,483,129	+				-0.2
2,483,130	-				-1.0
2,483,130	-				-1.7
2,483,130	-				-0.3
2,483,130	-				+1.1
2,483,130	-				-0.7
2,483,130	-				-1.0
2,483,130	-				-0.7
2,483,130	-				-1.3
2,483,130	-				+0.3
2,483,172	+		Pf1N1B4_2169	0.11	+1.2
2,483,172	+		Pf1N1B4_2169	0.11	+0.3
2,483,172	+		Pf1N1B4_2169	0.11	-1.9
2,483,172	+		Pf1N1B4_2169	0.11	+0.3
2,483,172	+		Pf1N1B4_2169	0.11	-1.1
2,483,173	-		Pf1N1B4_2169	0.12	-0.8
2,483,173	-		Pf1N1B4_2169	0.12	+1.2
2,483,173	-		Pf1N1B4_2169	0.12	+1.6
2,483,173	-		Pf1N1B4_2169	0.12	-0.6