Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_137 and Pf1N1B4_138 are separated by 269 nucleotides Pf1N1B4_138 and Pf1N1B4_139 overlap by 4 nucleotides
Pf1N1B4_137 - Pyoverdine biosynthesis related protein PvdP, at 152,644 to 154,269
_137
Pf1N1B4_138 - Putative dipeptidase, pyoverdin biosynthesis PvdM, at 154,539 to 155,915
_138
Pf1N1B4_139 - Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V, at 155,912 to 157,198
_139
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1 at 153.849 kb on - strand, within Pf1N1B4_137 at 153.849 kb on - strand, within Pf1N1B4_137 at 153.849 kb on - strand, within Pf1N1B4_137 at 153.894 kb on - strand, within Pf1N1B4_137 at 153.983 kb on + strand, within Pf1N1B4_137 at 154.200 kb on - strand at 154.311 kb on + strand at 154.312 kb on - strand at 154.312 kb on - strand at 154.312 kb on - strand at 154.322 kb on + strand at 154.323 kb on - strand at 154.338 kb on - strand at 154.351 kb on + strand at 154.352 kb on - strand at 154.428 kb on + strand at 154.575 kb on + strand at 154.576 kb on - strand at 154.576 kb on - strand at 155.611 kb on - strand at 155.670 kb on + strand, within Pf1N1B4_138 at 155.671 kb on - strand, within Pf1N1B4_138 at 156.071 kb on + strand, within Pf1N1B4_139 at 156.072 kb on - strand, within Pf1N1B4_139 at 156.072 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.617 kb on + strand, within Pf1N1B4_139 at 156.618 kb on - strand, within Pf1N1B4_139 at 156.618 kb on - strand, within Pf1N1B4_139
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 153,849 - Pf1N1B4_137 0.74 +1.4 153,849 - Pf1N1B4_137 0.74 -1.2 153,849 - Pf1N1B4_137 0.74 +0.5 153,894 - Pf1N1B4_137 0.77 -2.4 153,983 + Pf1N1B4_137 0.82 +1.6 154,200 - -2.5 154,311 + -0.1 154,312 - -0.1 154,312 - +0.6 154,312 - -1.6 154,322 + +0.4 154,323 - -2.4 154,338 - +0.8 154,351 + -0.3 154,352 - -1.4 154,428 + -1.4 154,575 + -1.5 154,576 - +0.7 154,576 - -1.9 155,611 - -0.3 155,670 + Pf1N1B4_138 0.82 -0.9 155,671 - Pf1N1B4_138 0.82 -2.4 156,071 + Pf1N1B4_139 0.12 -2.4 156,072 - Pf1N1B4_139 0.12 +1.1 156,072 - Pf1N1B4_139 0.12 -2.4 156,360 - Pf1N1B4_139 0.35 +0.4 156,360 - Pf1N1B4_139 0.35 +0.2 156,360 - Pf1N1B4_139 0.35 -2.0 156,617 + Pf1N1B4_139 0.55 -1.6 156,618 - Pf1N1B4_139 0.55 +0.3 156,618 - Pf1N1B4_139 0.55 -2.2
Or see this region's nucleotide sequence