Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07930

Experiment: Phaeo_ML1_MIT diversity barseq

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c07920 and PGA1_c07930 overlap by 4 nucleotidesPGA1_c07930 and PGA1_c07940 are separated by 129 nucleotides PGA1_c07920: PGA1_c07920 - signal transduction histidine kinase, at 821,849 to 823,264 _c07920 PGA1_c07930: PGA1_c07930 - two-component system response regulator, at 823,261 to 823,926 _c07930 PGA1_c07940: PGA1_c07940 - Uncharacterized protein conserved in bacteria, at 824,056 to 825,033 _c07940 Position (kb) 823 824Strain fitness (log2 ratio) -2 -1 0 1 2 3at 822.647 kb on - strand, within PGA1_c07920at 822.685 kb on + strand, within PGA1_c07920at 822.695 kb on + strand, within PGA1_c07920at 822.759 kb on - strand, within PGA1_c07920at 822.803 kb on + strand, within PGA1_c07920at 822.811 kb on - strand, within PGA1_c07920at 822.888 kb on + strand, within PGA1_c07920at 822.898 kb on + strand, within PGA1_c07920at 822.927 kb on - strand, within PGA1_c07920at 823.034 kb on - strand, within PGA1_c07920at 823.036 kb on + strand, within PGA1_c07920at 823.112 kb on - strand, within PGA1_c07920at 823.252 kb on - strandat 823.281 kb on + strandat 823.296 kb on + strandat 823.311 kb on + strandat 823.319 kb on - strandat 823.321 kb on + strandat 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.459 kb on + strand, within PGA1_c07930at 823.467 kb on - strand, within PGA1_c07930at 823.467 kb on - strand, within PGA1_c07930at 823.472 kb on - strand, within PGA1_c07930at 823.500 kb on + strand, within PGA1_c07930at 823.500 kb on + strand, within PGA1_c07930at 823.500 kb on + strand, within PGA1_c07930at 823.508 kb on - strand, within PGA1_c07930at 823.508 kb on - strand, within PGA1_c07930at 823.508 kb on - strand, within PGA1_c07930at 823.508 kb on - strand, within PGA1_c07930at 823.584 kb on - strand, within PGA1_c07930at 823.646 kb on + strand, within PGA1_c07930at 823.856 kb on - strand, within PGA1_c07930at 823.893 kb on + strandat 823.893 kb on + strandat 823.951 kb on + strandat 823.959 kb on - strandat 823.969 kb on - strandat 823.994 kb on + strandat 824.088 kb on + strandat 824.088 kb on - strandat 824.109 kb on + strandat 824.190 kb on + strand, within PGA1_c07940at 824.231 kb on - strand, within PGA1_c07940at 824.281 kb on + strand, within PGA1_c07940at 824.310 kb on + strand, within PGA1_c07940at 824.350 kb on - strand, within PGA1_c07940at 824.587 kb on + strand, within PGA1_c07940at 824.613 kb on - strand, within PGA1_c07940at 824.674 kb on + strand, within PGA1_c07940at 824.751 kb on - strand, within PGA1_c07940at 824.755 kb on + strand, within PGA1_c07940at 824.760 kb on + strand, within PGA1_c07940at 824.776 kb on + strand, within PGA1_c07940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phaeo_ML1_MIT diversity barseq
remove
822,647 - PGA1_c07920 0.56 -1.0
822,685 + PGA1_c07920 0.59 +1.6
822,695 + PGA1_c07920 0.60 -0.1
822,759 - PGA1_c07920 0.64 -1.0
822,803 + PGA1_c07920 0.67 -0.3
822,811 - PGA1_c07920 0.68 +1.2
822,888 + PGA1_c07920 0.73 -0.4
822,898 + PGA1_c07920 0.74 -1.4
822,927 - PGA1_c07920 0.76 +0.1
823,034 - PGA1_c07920 0.84 +1.0
823,036 + PGA1_c07920 0.84 +0.0
823,112 - PGA1_c07920 0.89 -0.6
823,252 - +1.4
823,281 + +1.0
823,296 + -2.0
823,311 + +0.3
823,319 - +0.3
823,321 + +0.2
823,329 - PGA1_c07930 0.10 -1.0
823,329 - PGA1_c07930 0.10 -0.4
823,329 - PGA1_c07930 0.10 +0.1
823,329 - PGA1_c07930 0.10 +3.7
823,329 - PGA1_c07930 0.10 +1.1
823,329 - PGA1_c07930 0.10 -0.1
823,329 - PGA1_c07930 0.10 +0.6
823,329 - PGA1_c07930 0.10 -1.4
823,459 + PGA1_c07930 0.30 -1.4
823,467 - PGA1_c07930 0.31 -0.7
823,467 - PGA1_c07930 0.31 -0.2
823,472 - PGA1_c07930 0.32 -0.2
823,500 + PGA1_c07930 0.36 -1.0
823,500 + PGA1_c07930 0.36 -0.6
823,500 + PGA1_c07930 0.36 +0.8
823,508 - PGA1_c07930 0.37 +0.6
823,508 - PGA1_c07930 0.37 +0.6
823,508 - PGA1_c07930 0.37 -0.9
823,508 - PGA1_c07930 0.37 +0.1
823,584 - PGA1_c07930 0.48 -0.2
823,646 + PGA1_c07930 0.58 +0.1
823,856 - PGA1_c07930 0.89 +0.7
823,893 + +0.1
823,893 + +0.3
823,951 + -0.9
823,959 - +1.4
823,969 - +0.6
823,994 + +1.5
824,088 + +0.6
824,088 - +0.7
824,109 + +0.6
824,190 + PGA1_c07940 0.14 +2.9
824,231 - PGA1_c07940 0.18 -0.9
824,281 + PGA1_c07940 0.23 -1.6
824,310 + PGA1_c07940 0.26 +0.2
824,350 - PGA1_c07940 0.30 -0.2
824,587 + PGA1_c07940 0.54 -0.4
824,613 - PGA1_c07940 0.57 -1.5
824,674 + PGA1_c07940 0.63 -0.4
824,751 - PGA1_c07940 0.71 +1.4
824,755 + PGA1_c07940 0.71 -1.0
824,760 + PGA1_c07940 0.72 +1.1
824,776 + PGA1_c07940 0.74 +1.0

Or see this region's nucleotide sequence