Experiment: Phaeo_ML1_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07590 and PGA1_c07600 are separated by 62 nucleotides PGA1_c07600 and PGA1_c07610 are separated by 144 nucleotides PGA1_c07610 and PGA1_c07620 are separated by 114 nucleotides
PGA1_c07590: PGA1_c07590 - aerotaxis receptor-like protein, at 784,790 to 786,010
_c07590
PGA1_c07600: PGA1_c07600 - transcriptional regulator, AsnC / lrp family, at 786,073 to 786,528
_c07600
PGA1_c07610: PGA1_c07610 - 4-hydroxyphenylpyruvate dioxygenase Hpd, at 786,673 to 787,773
_c07610
PGA1_c07620: PGA1_c07620 - Type IV pilus biogenesis., at 787,888 to 790,587
_c07620
Position (kb) 786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 785.688 kb on + strand, within PGA1_c07590 at 785.706 kb on + strand, within PGA1_c07590 at 785.714 kb on - strand, within PGA1_c07590 at 785.714 kb on - strand, within PGA1_c07590 at 785.741 kb on + strand, within PGA1_c07590 at 785.757 kb on + strand, within PGA1_c07590 at 785.757 kb on + strand, within PGA1_c07590 at 785.765 kb on - strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.870 kb on + strand, within PGA1_c07590 at 785.911 kb on + strand at 786.025 kb on + strand at 786.025 kb on + strand at 786.025 kb on + strand at 786.038 kb on - strand at 786.041 kb on + strand at 786.049 kb on - strand at 786.051 kb on + strand at 786.051 kb on + strand at 786.059 kb on - strand at 786.061 kb on - strand at 786.078 kb on - strand at 786.189 kb on + strand, within PGA1_c07600 at 786.194 kb on + strand, within PGA1_c07600 at 786.197 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.231 kb on + strand, within PGA1_c07600 at 786.231 kb on + strand, within PGA1_c07600 at 786.235 kb on + strand, within PGA1_c07600 at 786.241 kb on + strand, within PGA1_c07600 at 786.262 kb on + strand, within PGA1_c07600 at 786.270 kb on - strand, within PGA1_c07600 at 786.270 kb on - strand, within PGA1_c07600 at 786.319 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.327 kb on - strand, within PGA1_c07600 at 786.327 kb on - strand, within PGA1_c07600 at 786.331 kb on + strand, within PGA1_c07600 at 786.332 kb on - strand, within PGA1_c07600 at 786.339 kb on - strand, within PGA1_c07600 at 786.339 kb on - strand, within PGA1_c07600 at 786.359 kb on + strand, within PGA1_c07600 at 786.379 kb on + strand, within PGA1_c07600 at 786.393 kb on - strand, within PGA1_c07600 at 786.434 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on - strand, within PGA1_c07600 at 786.442 kb on - strand, within PGA1_c07600 at 786.450 kb on - strand, within PGA1_c07600 at 786.450 kb on - strand, within PGA1_c07600 at 786.515 kb on + strand at 786.527 kb on - strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.586 kb on + strand at 786.586 kb on + strand at 786.586 kb on + strand at 786.594 kb on - strand at 786.594 kb on - strand at 786.648 kb on - strand at 786.665 kb on - strand at 786.677 kb on + strand at 786.679 kb on - strand at 786.679 kb on - strand at 786.679 kb on - strand at 786.704 kb on - strand at 786.739 kb on - strand at 786.741 kb on + strand at 786.773 kb on + strand at 786.781 kb on - strand at 786.806 kb on + strand, within PGA1_c07610 at 786.809 kb on - strand, within PGA1_c07610 at 787.037 kb on - strand, within PGA1_c07610 at 787.102 kb on - strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.165 kb on - strand, within PGA1_c07610 at 787.174 kb on + strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.189 kb on - strand, within PGA1_c07610 at 787.293 kb on + strand, within PGA1_c07610 at 787.296 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.313 kb on - strand, within PGA1_c07610 at 787.365 kb on + strand, within PGA1_c07610 at 787.400 kb on + strand, within PGA1_c07610 at 787.496 kb on + strand, within PGA1_c07610 at 787.504 kb on - strand, within PGA1_c07610 at 787.507 kb on - strand, within PGA1_c07610 at 787.510 kb on + strand, within PGA1_c07610 at 787.518 kb on - strand, within PGA1_c07610 at 787.578 kb on + strand, within PGA1_c07610 at 787.591 kb on + strand, within PGA1_c07610 at 787.671 kb on + strand at 787.679 kb on - strand at 787.679 kb on - strand at 787.686 kb on - strand at 787.758 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.879 kb on + strand at 787.879 kb on + strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.922 kb on - strand at 787.956 kb on - strand at 787.999 kb on - strand at 788.051 kb on + strand at 788.078 kb on - strand at 788.098 kb on + strand at 788.120 kb on + strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.178 kb on + strand, within PGA1_c07620 at 788.218 kb on - strand, within PGA1_c07620 at 788.225 kb on + strand, within PGA1_c07620 at 788.228 kb on - strand, within PGA1_c07620 at 788.228 kb on - strand, within PGA1_c07620 at 788.263 kb on + strand, within PGA1_c07620 at 788.263 kb on + strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.273 kb on - strand, within PGA1_c07620 at 788.381 kb on + strand, within PGA1_c07620 at 788.505 kb on + strand, within PGA1_c07620 at 788.506 kb on + strand, within PGA1_c07620 at 788.588 kb on + strand, within PGA1_c07620 at 788.596 kb on - strand, within PGA1_c07620 at 788.596 kb on - strand, within PGA1_c07620 at 788.633 kb on + strand, within PGA1_c07620 at 788.634 kb on + strand, within PGA1_c07620 at 788.634 kb on + strand, within PGA1_c07620 at 788.641 kb on - strand, within PGA1_c07620 at 788.642 kb on - strand, within PGA1_c07620 at 788.738 kb on + strand, within PGA1_c07620 at 788.746 kb on - strand, within PGA1_c07620 at 788.762 kb on + strand, within PGA1_c07620
Per-strain Table
Position Strand Gene LocusTag Fraction Phaeo_ML1_MIT diversity barseq remove 785,688 + PGA1_c07590 0.74 -1.1 785,706 + PGA1_c07590 0.75 -0.0 785,714 - PGA1_c07590 0.76 +0.5 785,714 - PGA1_c07590 0.76 +0.9 785,741 + PGA1_c07590 0.78 +1.0 785,757 + PGA1_c07590 0.79 -0.6 785,757 + PGA1_c07590 0.79 -0.5 785,765 - PGA1_c07590 0.80 -0.0 785,805 + PGA1_c07590 0.83 -0.4 785,805 + PGA1_c07590 0.83 +0.3 785,805 + PGA1_c07590 0.83 -1.0 785,805 + PGA1_c07590 0.83 -0.4 785,813 - PGA1_c07590 0.84 -0.8 785,813 - PGA1_c07590 0.84 -0.5 785,813 - PGA1_c07590 0.84 +2.2 785,813 - PGA1_c07590 0.84 +0.1 785,870 + PGA1_c07590 0.88 +0.9 785,911 + +0.5 786,025 + -0.0 786,025 + -0.3 786,025 + -0.5 786,038 - -0.6 786,041 + -0.7 786,049 - -1.7 786,051 + +0.1 786,051 + +0.6 786,059 - +0.6 786,061 - +0.2 786,078 - +0.1 786,189 + PGA1_c07600 0.25 -0.5 786,194 + PGA1_c07600 0.27 -1.0 786,197 - PGA1_c07600 0.27 -0.9 786,202 - PGA1_c07600 0.28 -0.9 786,202 - PGA1_c07600 0.28 +1.4 786,202 - PGA1_c07600 0.28 -1.3 786,231 + PGA1_c07600 0.35 -1.4 786,231 + PGA1_c07600 0.35 -0.2 786,235 + PGA1_c07600 0.36 +1.6 786,241 + PGA1_c07600 0.37 -0.6 786,262 + PGA1_c07600 0.41 +0.7 786,270 - PGA1_c07600 0.43 -1.3 786,270 - PGA1_c07600 0.43 +1.7 786,319 + PGA1_c07600 0.54 -0.6 786,324 + PGA1_c07600 0.55 +0.5 786,324 + PGA1_c07600 0.55 +0.6 786,324 + PGA1_c07600 0.55 +0.7 786,327 - PGA1_c07600 0.56 +0.6 786,327 - PGA1_c07600 0.56 -1.9 786,331 + PGA1_c07600 0.57 +0.6 786,332 - PGA1_c07600 0.57 +1.0 786,339 - PGA1_c07600 0.58 +0.3 786,339 - PGA1_c07600 0.58 +0.7 786,359 + PGA1_c07600 0.63 -1.4 786,379 + PGA1_c07600 0.67 -1.4 786,393 - PGA1_c07600 0.70 +1.6 786,434 + PGA1_c07600 0.79 -0.1 786,442 + PGA1_c07600 0.81 +0.3 786,442 + PGA1_c07600 0.81 +0.5 786,442 + PGA1_c07600 0.81 -0.3 786,442 - PGA1_c07600 0.81 +1.2 786,442 - PGA1_c07600 0.81 -0.2 786,450 - PGA1_c07600 0.83 +0.8 786,450 - PGA1_c07600 0.83 +3.9 786,515 + -0.2 786,527 - +0.3 786,576 + -0.8 786,576 + +0.6 786,576 + +1.6 786,576 + -2.6 786,576 + -0.5 786,576 + +1.0 786,576 + +0.2 786,576 + -0.3 786,576 + -1.4 786,576 + -1.0 786,576 + -0.5 786,576 + +0.1 786,576 + +0.6 786,584 - -0.3 786,584 - +1.0 786,584 - -0.4 786,584 - +0.6 786,586 + -0.9 786,586 + -1.6 786,586 + -0.7 786,594 - +1.5 786,594 - +0.8 786,648 - +0.4 786,665 - -0.9 786,677 + +0.9 786,679 - -0.1 786,679 - +1.6 786,679 - +0.5 786,704 - +0.6 786,739 - +0.7 786,741 + +1.5 786,773 + +0.6 786,781 - +0.7 786,806 + PGA1_c07610 0.12 -2.0 786,809 - PGA1_c07610 0.12 +0.8 787,037 - PGA1_c07610 0.33 -0.4 787,102 - PGA1_c07610 0.39 +0.6 787,127 + PGA1_c07610 0.41 -1.6 787,127 + PGA1_c07610 0.41 -0.7 787,136 + PGA1_c07610 0.42 -0.3 787,136 + PGA1_c07610 0.42 +0.1 787,136 + PGA1_c07610 0.42 -0.9 787,136 + PGA1_c07610 0.42 +0.8 787,144 - PGA1_c07610 0.43 +1.6 787,144 - PGA1_c07610 0.43 -0.4 787,151 + PGA1_c07610 0.43 -2.2 787,151 + PGA1_c07610 0.43 -0.7 787,151 + PGA1_c07610 0.43 -1.4 787,165 - PGA1_c07610 0.45 -0.1 787,174 + PGA1_c07610 0.46 -1.2 787,182 - PGA1_c07610 0.46 -1.9 787,182 - PGA1_c07610 0.46 +0.9 787,189 - PGA1_c07610 0.47 -0.1 787,293 + PGA1_c07610 0.56 -0.2 787,296 - PGA1_c07610 0.57 -1.7 787,303 - PGA1_c07610 0.57 -0.4 787,303 - PGA1_c07610 0.57 -2.9 787,313 - PGA1_c07610 0.58 +0.1 787,365 + PGA1_c07610 0.63 +1.0 787,400 + PGA1_c07610 0.66 -0.1 787,496 + PGA1_c07610 0.75 -0.5 787,504 - PGA1_c07610 0.75 +0.3 787,507 - PGA1_c07610 0.76 +0.2 787,510 + PGA1_c07610 0.76 -0.2 787,518 - PGA1_c07610 0.77 +0.4 787,578 + PGA1_c07610 0.82 -0.7 787,591 + PGA1_c07610 0.83 -2.3 787,671 + -2.1 787,679 - -0.3 787,679 - -0.2 787,686 - -0.4 787,758 + -2.4 787,777 + +0.3 787,777 + -0.6 787,777 + -0.6 787,777 + -0.5 787,777 + -0.6 787,777 + -1.4 787,777 + -0.4 787,785 - +2.6 787,785 - -0.5 787,785 - -2.4 787,785 - -0.6 787,879 + +0.6 787,879 + +0.5 787,887 - -1.6 787,887 - +0.5 787,887 - -1.9 787,887 - -0.0 787,887 - -0.5 787,887 - -0.8 787,922 - -0.9 787,956 - -0.5 787,999 - -0.6 788,051 + -0.2 788,078 - -0.5 788,098 + -0.4 788,120 + -1.4 788,153 - -0.6 788,153 - +0.6 788,153 - +0.6 788,153 - -1.4 788,178 + PGA1_c07620 0.11 +3.2 788,218 - PGA1_c07620 0.12 -0.4 788,225 + PGA1_c07620 0.12 -1.4 788,228 - PGA1_c07620 0.13 +2.0 788,228 - PGA1_c07620 0.13 -0.7 788,263 + PGA1_c07620 0.14 +0.6 788,263 + PGA1_c07620 0.14 +1.2 788,271 - PGA1_c07620 0.14 +2.4 788,271 - PGA1_c07620 0.14 +1.7 788,271 - PGA1_c07620 0.14 -0.1 788,271 - PGA1_c07620 0.14 -1.2 788,273 - PGA1_c07620 0.14 +0.3 788,381 + PGA1_c07620 0.18 -1.3 788,505 + PGA1_c07620 0.23 -0.7 788,506 + PGA1_c07620 0.23 -1.2 788,588 + PGA1_c07620 0.26 -1.4 788,596 - PGA1_c07620 0.26 +1.6 788,596 - PGA1_c07620 0.26 -0.0 788,633 + PGA1_c07620 0.28 +1.6 788,634 + PGA1_c07620 0.28 -0.4 788,634 + PGA1_c07620 0.28 +0.6 788,641 - PGA1_c07620 0.28 -0.1 788,642 - PGA1_c07620 0.28 +0.2 788,738 + PGA1_c07620 0.31 -0.4 788,746 - PGA1_c07620 0.32 +0.3 788,762 + PGA1_c07620 0.32 -0.6
Or see this region's nucleotide sequence