Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00560

Experiment: Phaeo_ML1_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00540 and PGA1_78p00550 are separated by 118 nucleotidesPGA1_78p00550 and PGA1_78p00560 overlap by 4 nucleotidesPGA1_78p00560 and PGA1_78p00570 are separated by 60 nucleotides PGA1_78p00540: PGA1_78p00540 - hypothetical protein, at 68,689 to 69,441 _78p00540 PGA1_78p00550: PGA1_78p00550 - putative transcriptional regulator, ArsR family, at 69,560 to 69,922 _78p00550 PGA1_78p00560: PGA1_78p00560 - Uncharacterized conserved protein, at 69,919 to 70,332 _78p00560 PGA1_78p00570: PGA1_78p00570 - hypothetical protein, at 70,393 to 71,322 _78p00570 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 68.929 kb on - strand, within PGA1_78p00540at 69.046 kb on + strand, within PGA1_78p00540at 69.111 kb on - strand, within PGA1_78p00540at 69.213 kb on + strand, within PGA1_78p00540at 69.969 kb on - strand, within PGA1_78p00560at 69.977 kb on + strand, within PGA1_78p00560at 69.980 kb on - strand, within PGA1_78p00560at 69.985 kb on - strand, within PGA1_78p00560at 70.023 kb on + strand, within PGA1_78p00560at 70.113 kb on + strand, within PGA1_78p00560at 70.539 kb on + strand, within PGA1_78p00570at 70.796 kb on - strand, within PGA1_78p00570

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Per-strain Table

Position Strand Gene LocusTag Fraction Phaeo_ML1_MIT diversity barseq
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68,929 - PGA1_78p00540 0.32 +2.6
69,046 + PGA1_78p00540 0.47 +1.3
69,111 - PGA1_78p00540 0.56 +0.6
69,213 + PGA1_78p00540 0.70 +0.3
69,969 - PGA1_78p00560 0.12 +0.7
69,977 + PGA1_78p00560 0.14 -2.3
69,980 - PGA1_78p00560 0.15 -0.9
69,985 - PGA1_78p00560 0.16 +1.3
70,023 + PGA1_78p00560 0.25 -0.8
70,113 + PGA1_78p00560 0.47 -1.1
70,539 + PGA1_78p00570 0.16 +0.9
70,796 - PGA1_78p00570 0.43 -2.1

Or see this region's nucleotide sequence