Experiment: Phaeo_ML1_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00830 and PGA1_262p00840 are separated by 91 nucleotides PGA1_262p00840 and PGA1_262p00850 are separated by 130 nucleotides
PGA1_262p00830: PGA1_262p00830 - hypothetical protein, at 92,033 to 93,094
_262p00830
PGA1_262p00840: PGA1_262p00840 - hypothetical protein, at 93,186 to 94,511
_262p00840
PGA1_262p00850: PGA1_262p00850 - putative sodium dependent symporter, at 94,642 to 96,099
_262p00850
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 92.236 kb on - strand, within PGA1_262p00830 at 92.374 kb on + strand, within PGA1_262p00830 at 92.616 kb on - strand, within PGA1_262p00830 at 92.667 kb on - strand, within PGA1_262p00830 at 92.680 kb on + strand, within PGA1_262p00830 at 92.689 kb on - strand, within PGA1_262p00830 at 92.713 kb on + strand, within PGA1_262p00830 at 92.796 kb on - strand, within PGA1_262p00830 at 92.935 kb on + strand, within PGA1_262p00830 at 92.943 kb on - strand, within PGA1_262p00830 at 93.240 kb on + strand at 93.411 kb on + strand, within PGA1_262p00840 at 93.513 kb on + strand, within PGA1_262p00840 at 93.582 kb on + strand, within PGA1_262p00840 at 93.588 kb on + strand, within PGA1_262p00840 at 93.646 kb on + strand, within PGA1_262p00840 at 93.654 kb on - strand, within PGA1_262p00840 at 93.662 kb on - strand, within PGA1_262p00840 at 93.680 kb on - strand, within PGA1_262p00840 at 93.709 kb on + strand, within PGA1_262p00840 at 93.922 kb on - strand, within PGA1_262p00840 at 93.924 kb on + strand, within PGA1_262p00840 at 93.929 kb on + strand, within PGA1_262p00840 at 93.982 kb on - strand, within PGA1_262p00840 at 94.153 kb on + strand, within PGA1_262p00840 at 94.457 kb on - strand at 94.470 kb on - strand at 94.492 kb on + strand at 94.572 kb on + strand at 95.149 kb on + strand, within PGA1_262p00850
Per-strain Table
Position Strand Gene LocusTag Fraction Phaeo_ML1_MIT diversity barseq remove 92,236 - PGA1_262p00830 0.19 +0.3 92,374 + PGA1_262p00830 0.32 -0.2 92,616 - PGA1_262p00830 0.55 +0.5 92,667 - PGA1_262p00830 0.60 +0.9 92,680 + PGA1_262p00830 0.61 -3.6 92,689 - PGA1_262p00830 0.62 -0.5 92,713 + PGA1_262p00830 0.64 -0.4 92,796 - PGA1_262p00830 0.72 +0.5 92,935 + PGA1_262p00830 0.85 -0.8 92,943 - PGA1_262p00830 0.86 -0.8 93,240 + +0.4 93,411 + PGA1_262p00840 0.17 -1.4 93,513 + PGA1_262p00840 0.25 -2.6 93,582 + PGA1_262p00840 0.30 -1.3 93,588 + PGA1_262p00840 0.30 +0.1 93,646 + PGA1_262p00840 0.35 -1.8 93,654 - PGA1_262p00840 0.35 -0.9 93,662 - PGA1_262p00840 0.36 +0.4 93,680 - PGA1_262p00840 0.37 +0.4 93,709 + PGA1_262p00840 0.39 -0.3 93,922 - PGA1_262p00840 0.56 -0.4 93,924 + PGA1_262p00840 0.56 -0.1 93,929 + PGA1_262p00840 0.56 +0.0 93,982 - PGA1_262p00840 0.60 -0.5 94,153 + PGA1_262p00840 0.73 +0.8 94,457 - +0.6 94,470 - +0.2 94,492 + +0.5 94,572 + -1.2 95,149 + PGA1_262p00850 0.35 +1.2
Or see this region's nucleotide sequence