Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4633

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
6,064,254	-		BT4632	0.28	-1.5
6,064,320	+		BT4632	0.33	-0.5
6,064,411	-		BT4632	0.40	-1.2
6,064,435	-		BT4632	0.42	-0.2
6,064,525	-		BT4632	0.49	-1.7
6,064,527	-		BT4632	0.49	-0.9
6,064,652	-		BT4632	0.58	-0.2
6,064,662	+		BT4632	0.59	-0.5
6,064,662	+		BT4632	0.59	+0.1
6,064,663	-		BT4632	0.59	-1.2
6,064,681	+		BT4632	0.60	-1.7
6,064,686	+		BT4632	0.61	-0.1
6,064,687	-		BT4632	0.61	-0.5
6,064,688	+		BT4632	0.61	+0.1
6,064,688	+		BT4632	0.61	-0.5
6,064,708	-		BT4632	0.62	-3.3
6,064,716	+		BT4632	0.63	-1.5
6,064,717	-		BT4632	0.63	-1.9
6,064,717	-		BT4632	0.63	-1.9
6,064,731	+		BT4632	0.64	-1.5
6,064,749	+		BT4632	0.66	-0.4
6,064,749	+		BT4632	0.66	-1.5
6,064,750	-		BT4632	0.66	-0.5
6,064,750	-		BT4632	0.66	-2.6
6,064,896	-		BT4632	0.77	-0.0
6,064,899	+		BT4632	0.77	+0.3
6,064,930	+		BT4632	0.79	-0.1
6,064,937	+		BT4632	0.80	-0.5
6,064,937	+		BT4632	0.80	-0.6
6,064,984	+		BT4632	0.83	+0.4
6,065,038	+		BT4632	0.87	+0.4
6,065,038	+		BT4632	0.87	-1.5
6,065,069	+		BT4632	0.90	+0.0
6,065,070	-		BT4632	0.90	-0.2
6,065,173	-				+0.1
6,065,193	+				-2.5
6,065,194	-				-0.9
6,065,194	-				-0.5
6,065,198	-				+0.2
6,065,242	+				-2.9
6,065,248	+				-0.6
6,065,313	+				-1.9
6,065,313	+				-0.5
6,065,313	+				-1.3
6,065,317	+				-1.3
6,065,404	+				-0.1
6,065,454	+		BT4633	0.11	+0.5
6,065,509	-		BT4633	0.14	-0.5
6,065,589	+		BT4633	0.18	-0.8
6,065,611	-		BT4633	0.19	-1.2
6,065,624	+		BT4633	0.20	-1.5
6,065,653	+		BT4633	0.22	-0.5
6,065,654	-		BT4633	0.22	+2.7
6,065,655	+		BT4633	0.22	-1.2
6,065,709	-		BT4633	0.25	-1.7
6,065,726	+		BT4633	0.25	-0.0
6,065,759	+		BT4633	0.27	-1.7
6,065,760	-		BT4633	0.27	-1.5
6,065,760	-		BT4633	0.27	+0.5
6,065,761	+		BT4633	0.27	-2.0
6,065,776	+		BT4633	0.28	-0.2
6,065,777	-		BT4633	0.28	-1.7
6,065,780	+		BT4633	0.28	-1.8
6,065,781	-		BT4633	0.28	+1.0
6,065,781	-		BT4633	0.28	+0.0
6,065,798	+		BT4633	0.29	+0.4
6,065,799	-		BT4633	0.29	+0.1
6,065,831	+		BT4633	0.31	-1.5
6,065,831	+		BT4633	0.31	-1.2
6,065,863	-		BT4633	0.33	-0.9
6,065,868	-		BT4633	0.33	+0.8
6,065,960	+		BT4633	0.38	+0.2
6,065,994	-		BT4633	0.40	-1.6
6,066,042	-		BT4633	0.42	+1.1
6,066,110	+		BT4633	0.46	-2.3
6,066,110	+		BT4633	0.46	+0.1
6,066,153	-		BT4633	0.48	+1.7
6,066,174	-		BT4633	0.49	-0.5
6,066,174	-		BT4633	0.49	-0.8
6,066,205	+		BT4633	0.51	-0.4
6,066,248	-		BT4633	0.53	+1.1
6,066,277	+		BT4633	0.55	+1.1
6,066,390	+		BT4633	0.61	+0.0
6,066,408	+		BT4633	0.62	-0.2
6,066,439	-		BT4633	0.63	-1.3
6,066,439	-		BT4633	0.63	-0.1
6,066,481	-		BT4633	0.65	+0.6
6,066,504	-		BT4633	0.67	-0.5
6,066,507	+		BT4633	0.67	+0.1
6,066,532	+		BT4633	0.68	+0.9
6,066,532	+		BT4633	0.68	-2.3
6,066,537	+		BT4633	0.68	-1.0
6,066,557	+		BT4633	0.70	-1.5
6,066,566	+		BT4633	0.70	-1.2
6,066,571	-		BT4633	0.70	+1.1
6,066,614	+		BT4633	0.73	-0.9
6,066,614	+		BT4633	0.73	+0.1
6,066,614	+		BT4633	0.73	-0.2
6,066,649	+		BT4633	0.74	-0.5
6,066,650	-		BT4633	0.74	-1.5
6,066,671	+		BT4633	0.76	-2.2
6,066,687	-		BT4633	0.76	-1.9
6,066,882	-		BT4633	0.87	-1.5
6,066,971	-				+0.1
6,066,983	+				+0.5
6,067,002	+				+0.8
6,067,044	+				-2.5
6,067,045	-				-0.2
6,067,193	-				-3.0
6,067,196	+				-0.2
6,067,196	+				-2.5
6,067,200	-				-0.9
6,067,234	+				-1.5
6,067,263	-				-1.9
6,067,396	+				-2.6
6,067,428	+				+0.7
6,067,429	-				-2.0
6,067,510	-		BT4634	0.11	-1.5
6,067,612	+		BT4634	0.14	-0.9
6,067,620	-		BT4634	0.14	+0.5
6,067,623	+		BT4634	0.14	-1.7
6,067,638	+		BT4634	0.15	-2.0
6,067,665	+		BT4634	0.15	-0.2
6,067,665	+		BT4634	0.15	+1.1
6,067,679	+		BT4634	0.16	-0.9
6,067,684	+		BT4634	0.16	-0.5
6,067,684	+		BT4634	0.16	+0.1
6,067,741	-		BT4634	0.18	-0.2
6,067,741	-		BT4634	0.18	+1.1
6,067,784	+		BT4634	0.19	-1.7
6,067,857	+		BT4634	0.21	-1.5
6,067,924	+		BT4634	0.23	-0.3
6,067,925	-		BT4634	0.23	+2.1
6,067,952	+		BT4634	0.24	+0.1
6,067,952	+		BT4634	0.24	-2.9
6,067,953	-		BT4634	0.24	-0.9
6,068,016	+		BT4634	0.26	-2.3
6,068,073	+		BT4634	0.27	-0.9
6,068,079	-		BT4634	0.28	-3.0
6,068,084	+		BT4634	0.28	-1.7