Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4415

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
5,817,424	-		BT4413	0.68	-0.5
5,817,435	-		BT4413	0.71	-1.9
5,817,435	-		BT4413	0.71	-1.9
5,817,457	-		BT4413	0.76	-1.9
5,817,511	-		BT4413	0.88	-0.1
5,817,511	-				-0.5
5,817,527	-				+1.1
5,817,527	-				+0.3
5,817,527	-				-2.1
5,817,527	-				-2.1
5,817,529	+				-1.2
5,817,535	+				-0.2
5,817,535	+				-1.9
5,817,537	+				-1.9
5,817,538	-				-1.5
5,817,538	-				-2.3
5,817,555	+				-0.7
5,817,614	-				-1.9
5,817,614	-				-0.9
5,817,617	+				+0.1
5,817,626	+				-1.8
5,817,640	-				+0.9
5,817,642	-				-2.2
5,817,715	+				-0.3
5,817,716	-				-1.4
5,817,833	-				-1.7
5,817,873	-		BT4414	0.16	-1.3
5,817,873	-		BT4414	0.16	-2.3
5,818,048	-		BT4414	0.48	-1.5
5,818,188	-		BT4414	0.74	+0.4
5,818,236	-		BT4414	0.82	-1.2
5,818,347	+				-2.1
5,818,458	+				-0.1
5,818,459	-				+0.1
5,818,491	+		BT4415	0.12	-0.3
5,818,492	-		BT4415	0.12	-1.5
5,818,561	-		BT4415	0.18	-0.5
5,818,566	-		BT4415	0.18	-2.5
5,818,628	+		BT4415	0.23	+0.4
5,818,674	+		BT4415	0.27	-1.7
5,818,676	+		BT4415	0.27	-2.1
5,818,751	+		BT4415	0.33	-0.4
5,818,763	+		BT4415	0.34	-1.5
5,818,764	-		BT4415	0.34	-2.2
5,818,846	-		BT4415	0.41	-1.7
5,818,970	-		BT4415	0.51	-2.1
5,818,982	+		BT4415	0.52	-0.9
5,819,010	+		BT4415	0.54	-2.6
5,819,010	+		BT4415	0.54	-1.2
5,819,011	-		BT4415	0.55	-2.3
5,819,042	-		BT4415	0.57	-0.9
5,819,172	+		BT4415	0.68	-2.9
5,819,173	-		BT4415	0.68	-0.6
5,819,176	+		BT4415	0.68	-3.4
5,819,218	-		BT4415	0.72	-3.1
5,819,294	+		BT4415	0.78	-3.2
5,819,344	+		BT4415	0.82	-0.9
5,819,354	-		BT4415	0.83	-2.7
5,819,374	+		BT4415	0.84	-0.7
5,819,404	-		BT4415	0.87	-0.9
5,819,412	-		BT4415	0.88	-0.7
5,819,416	-		BT4415	0.88	+0.7
5,819,444	+				-1.5
5,819,445	-				-1.2
5,819,496	+				-0.9
5,819,537	-				-2.8
5,819,537	-				-2.8
5,819,538	+				-2.1
5,819,554	+				-1.7
5,819,569	-				-2.7
5,819,569	-				-0.4
5,819,657	+				-0.9
5,819,658	-				-2.6
5,819,684	+		BT4416	0.10	-1.5
5,819,685	-		BT4416	0.10	+1.1
5,819,702	+		BT4416	0.12	+2.4
5,819,833	+		BT4416	0.30	-1.2
5,819,833	+		BT4416	0.30	+1.2
5,819,911	+		BT4416	0.40	-0.2
5,819,918	-		BT4416	0.41	-0.9
5,819,973	-		BT4416	0.49	+0.8
5,819,974	+		BT4416	0.49	-2.3
5,820,150	+		BT4416	0.72	-1.2
5,820,273	-		BT4416	0.89	+0.1
5,820,380	-				-1.7
5,820,455	+				-1.2
5,820,475	-				+0.2
5,820,478	+				+0.4