Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4116

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
5,388,830	-		BT4115	0.43	-0.3
5,388,842	+		BT4115	0.44	+0.2
5,388,887	-		BT4115	0.47	-1.8
5,388,910	+		BT4115	0.48	+0.3
5,388,921	-		BT4115	0.49	-2.2
5,388,961	+		BT4115	0.52	-1.8
5,389,054	+		BT4115	0.58	+1.3
5,389,055	-		BT4115	0.58	+0.7
5,389,079	+		BT4115	0.60	+1.0
5,389,079	+		BT4115	0.60	-2.5
5,389,160	+		BT4115	0.65	-1.7
5,389,192	-		BT4115	0.67	-0.0
5,389,211	+		BT4115	0.68	-1.2
5,389,501	+		BT4115	0.88	-0.8
5,389,501	+				+0.2
5,389,501	+		BT4115	0.88	-0.2
5,389,502	-		BT4115	0.88	-2.9
5,389,502	-		BT4115	0.88	+0.4
5,389,503	+		BT4115	0.88	-0.8
5,389,503	+		BT4115	0.88	-0.4
5,389,503	+		BT4115	0.88	-0.4
5,389,531	+		BT4115	0.90	-1.6
5,389,531	+		BT4115	0.90	-1.8
5,389,600	+				-0.8
5,389,644	-				+1.5
5,389,644	-				-2.0
5,389,648	-				-1.0
5,389,682	+				+0.1
5,389,686	+				-0.4
5,389,686	+				+0.1
5,389,687	-				-0.2
5,389,690	+				-1.8
5,389,691	-				-1.0
5,389,749	-				-1.7
5,389,749	-				-1.2
5,389,750	+				-1.6
5,389,751	-				+0.2
5,389,751	-				-0.4
5,389,761	+				-0.8
5,389,876	+		BT4116	0.12	-2.4
5,389,945	+		BT4116	0.16	-1.7
5,390,076	+		BT4116	0.25	-0.2
5,390,077	-		BT4116	0.25	-0.5
5,390,159	+		BT4116	0.30	-1.8
5,390,159	+		BT4116	0.30	-2.0
5,390,160	-		BT4116	0.30	+0.1
5,390,198	+		BT4116	0.32	-1.4
5,390,202	+		BT4116	0.33	-0.4
5,390,252	-		BT4116	0.36	-1.2
5,390,253	+		BT4116	0.36	-2.2
5,390,254	-		BT4116	0.36	-0.4
5,390,286	+		BT4116	0.38	-2.2
5,390,291	-		BT4116	0.38	-2.8
5,390,303	+		BT4116	0.39	-3.2
5,390,347	+		BT4116	0.42	-0.8
5,390,350	+		BT4116	0.42	-1.1
5,390,355	-		BT4116	0.42	-0.8
5,390,355	-		BT4116	0.42	+0.3
5,390,368	+		BT4116	0.43	-2.3
5,390,369	-		BT4116	0.43	-1.4
5,390,412	-		BT4116	0.46	-1.7
5,390,412	-		BT4116	0.46	-0.8
5,390,418	+		BT4116	0.46	-1.8
5,390,418	+		BT4116	0.46	-2.0
5,390,418	+		BT4116	0.46	-2.2
5,390,419	-		BT4116	0.46	-1.5
5,390,423	-		BT4116	0.47	-2.0
5,390,430	+		BT4116	0.47	-1.8
5,390,498	+		BT4116	0.51	-3.2
5,390,498	+		BT4116	0.51	+0.2
5,390,618	-		BT4116	0.59	-1.7
5,390,634	-		BT4116	0.60	-0.2
5,390,664	-		BT4116	0.62	-2.8
5,390,769	-		BT4116	0.69	-0.9
5,390,814	+		BT4116	0.72	-1.0
5,390,815	-		BT4116	0.72	-1.2
5,390,871	+		BT4116	0.75	-1.6
5,391,011	+		BT4116	0.84	+0.6
5,391,011	+		BT4116	0.84	-3.0
5,391,011	+		BT4116	0.84	+0.6
5,391,012	-		BT4116	0.84	-2.0
5,391,012	-		BT4116	0.84	-1.0
5,391,013	+		BT4116	0.84	-0.8
5,391,016	-		BT4116	0.84	-1.4
5,391,016	-		BT4116	0.84	-0.4
5,391,038	+		BT4116	0.86	+0.7
5,391,162	+				-2.9
5,391,216	+				-2.0
5,391,216	+				+0.0
5,391,254	+				+1.7
5,391,289	-				-1.5
5,391,304	+				-1.3
5,391,305	-				-0.8
5,391,309	-				-0.6
5,391,327	-				-3.4
5,391,385	-				-0.4
5,391,395	-				-3.0
5,391,407	-				-0.0
5,391,509	+				-0.4
5,391,537	-				-1.2
5,391,574	-				-0.8
5,391,676	-		BT4117	0.17	+0.6
5,391,677	+		BT4117	0.17	+1.2
5,391,681	-		BT4117	0.17	-1.4
5,391,683	+		BT4117	0.17	-0.2
5,391,684	-		BT4117	0.18	-1.0
5,391,684	-		BT4117	0.18	-0.7
5,391,705	+		BT4117	0.20	-1.7
5,391,707	+		BT4117	0.21	-2.8
5,391,707	+		BT4117	0.21	-1.0
5,391,728	+		BT4117	0.23	-1.7
5,391,753	+		BT4117	0.26	-0.8
5,391,761	+		BT4117	0.27	-1.0
5,391,910	-		BT4117	0.46	-1.4
5,391,925	-		BT4117	0.48	+0.6
5,392,050	-		BT4117	0.64	-0.8
5,392,128	+		BT4117	0.73	-1.6
5,392,129	-		BT4117	0.74	+1.2
5,392,150	-		BT4117	0.76	-1.0
5,392,150	-		BT4117	0.76	+1.2
5,392,165	-		BT4117	0.78	-0.7
5,392,184	+		BT4117	0.81	-2.0
5,392,184	+		BT4117	0.81	-0.7
5,392,184	+		BT4117	0.81	-2.4
5,392,185	-		BT4117	0.81	-2.0
5,392,185	-		BT4117	0.81	-1.0
5,392,187	-		BT4117	0.81	-1.2
5,392,208	+		BT4117	0.84	-1.4
5,392,215	+		BT4117	0.84	-1.4