Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3327

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
4,274,460	+				-1.6
4,274,461	-				+0.9
4,274,461	-				-0.7
4,274,518	+				+0.1
4,274,562	+		BT3326	0.11	-2.1
4,274,592	-		BT3326	0.14	-1.2
4,274,615	+		BT3326	0.17	+0.8
4,274,619	-		BT3326	0.17	+0.7
4,274,619	-		BT3326	0.17	+0.2
4,274,821	-		BT3326	0.38	-0.7
4,275,165	-		BT3326	0.75	-1.2
4,275,300	+		BT3326	0.89	-0.2
4,275,301	-		BT3326	0.89	-1.0
4,275,304	-		BT3326	0.89	-1.5
4,275,389	+				+0.3
4,275,394	+				-1.8
4,275,395	-				+1.3
4,275,404	-				-1.9
4,275,447	-				-0.7
4,275,680	+		BT3327	0.17	+0.3
4,275,732	-		BT3327	0.21	-0.2
4,275,768	-		BT3327	0.23	-3.6
4,275,798	-		BT3327	0.25	+0.3
4,275,838	+		BT3327	0.28	-2.7
4,275,840	+		BT3327	0.28	-0.6
4,275,841	-		BT3327	0.28	-0.2
4,275,884	+		BT3327	0.31	-1.6
4,275,961	+		BT3327	0.36	-0.0
4,276,019	-		BT3327	0.40	-2.7
4,276,034	-		BT3327	0.41	-0.7
4,276,039	+		BT3327	0.42	-2.0
4,276,040	-		BT3327	0.42	-2.1
4,276,040	-		BT3327	0.42	-0.7
4,276,109	+		BT3327	0.47	-1.7
4,276,109	+		BT3327	0.47	-2.4
4,276,110	-		BT3327	0.47	-2.1
4,276,112	-		BT3327	0.47	-0.8
4,276,212	-		BT3327	0.54	-1.0
4,276,277	+		BT3327	0.58	-2.5
4,276,277	+		BT3327	0.58	-0.6
4,276,334	-		BT3327	0.62	-2.7
4,276,358	+		BT3327	0.64	-0.2
4,276,400	-		BT3327	0.66	-0.2
4,276,444	-		BT3327	0.69	-2.2
4,276,479	+		BT3327	0.72	-0.9
4,276,598	-		BT3327	0.80	+0.8
4,276,658	-		BT3327	0.84	-2.4
4,276,853	+				-0.7
4,276,853	+				-0.7
4,276,855	+				-1.3
4,276,863	-				+0.7
4,276,889	-				-0.8
4,276,897	+				-0.7
4,276,916	+				+0.2
4,276,941	+				-1.8
4,276,941	+				-1.8
4,276,945	+				-0.2
4,276,945	+				-3.0
4,277,021	+				+0.4
4,277,074	+				-1.5
4,277,101	-				+0.7
4,277,130	+				-2.5
4,277,130	+				-2.1
4,277,172	+				-1.5
4,277,172	+				+1.3
4,277,172	+				+0.3
4,277,236	+				-1.9
4,277,260	+				+0.0
4,277,261	-				-2.6
4,277,386	-		BT3328	0.12	+1.3
4,277,387	+		BT3328	0.12	-0.2
4,277,387	+		BT3328	0.12	-0.7
4,277,412	-		BT3328	0.13	+1.2
4,277,480	+		BT3328	0.16	+1.3
4,277,480	+		BT3328	0.16	-1.0
4,277,484	-		BT3328	0.16	-1.8
4,277,548	-		BT3328	0.18	-2.6
4,277,616	-		BT3328	0.21	+1.9
4,277,656	-		BT3328	0.23	-0.7
4,277,656	-		BT3328	0.23	-2.0
4,277,739	-		BT3328	0.26	-2.5
4,277,763	+		BT3328	0.27	+0.8
4,277,775	+		BT3328	0.27	-1.7
4,277,826	+		BT3328	0.29	-2.5
4,277,884	-		BT3328	0.31	-0.7