Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2837

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
3,538,781	+		BT2836	0.50	+0.3
3,538,871	+		BT2836	0.55	-2.3
3,539,054	+		BT2836	0.65	-0.8
3,539,054	+		BT2836	0.65	-1.8
3,539,119	+				-1.0
3,539,145	-		BT2836	0.70	+0.3
3,539,145	-		BT2836	0.70	-2.0
3,539,185	-		BT2836	0.72	-0.7
3,539,236	-		BT2836	0.75	-1.0
3,539,265	+		BT2836	0.76	-1.2
3,539,353	+		BT2836	0.81	-0.2
3,539,354	-		BT2836	0.81	-1.6
3,539,354	-		BT2836	0.81	-1.8
3,539,354	-				+1.3
3,539,396	+				-1.0
3,539,396	+		BT2836	0.84	-2.1
3,539,397	-		BT2836	0.84	-0.8
3,539,405	+		BT2836	0.84	-1.2
3,539,405	+		BT2836	0.84	-3.0
3,539,422	+		BT2836	0.85	-1.4
3,539,422	+		BT2836	0.85	-0.7
3,539,423	-		BT2836	0.85	-2.8
3,539,443	-		BT2836	0.86	-1.7
3,539,495	-		BT2836	0.89	-1.7
3,539,528	+				-3.1
3,539,531	+				-3.5
3,539,531	+				-0.2
3,539,535	+				-2.7
3,539,535	+				+0.3
3,539,535	+				-1.0
3,539,535	+				+0.3
3,539,536	-				-0.1
3,539,540	-				-0.7
3,539,552	+				-2.7
3,539,553	-				-1.1
3,539,553	-				+0.3
3,539,553	-				-1.2
3,539,556	-				-2.9
3,539,595	+				-3.6
3,539,617	-				+0.3
3,539,656	-				+2.9
3,539,669	+				-0.1
3,539,670	-				-3.0
3,539,670	-				-0.7
3,539,670	-				-4.2
3,539,670	-				-2.1
3,539,670	-				-1.4
3,539,698	+				-1.5
3,539,699	-				-1.1
3,539,699	-				+0.3
3,539,717	+				+0.1
3,539,717	+				-3.5
3,539,721	+				+1.3
3,539,721	+				-3.3
3,539,722	-				-2.8
3,539,722	-				-1.8
3,539,736	+				-1.7
3,539,822	+		BT2837	0.12	-1.8
3,539,822	+		BT2837	0.12	-2.1
3,539,822	+		BT2837	0.12	-1.5
3,539,836	-		BT2837	0.13	-3.2
3,539,878	+		BT2837	0.17	-1.8
3,539,881	+				+0.3
3,539,882	-		BT2837	0.18	+0.3
3,539,885	+		BT2837	0.18	+1.3
3,539,886	-		BT2837	0.18	-2.0
3,539,889	+		BT2837	0.18	-3.1
3,539,889	+		BT2837	0.18	-1.9
3,539,889	+		BT2837	0.18	-1.7
3,539,889	+				+0.3
3,539,890	-		BT2837	0.18	-2.5
3,539,890	-		BT2837	0.18	-1.8
3,539,893	+		BT2837	0.19	-1.8
3,539,893	+		BT2837	0.19	-2.1
3,539,968	-		BT2837	0.26	-0.7
3,540,075	+		BT2837	0.37	-2.8
3,540,075	+		BT2837	0.37	-1.0
3,540,076	-		BT2837	0.37	-1.7
3,540,076	-		BT2837	0.37	-1.0
3,540,079	+		BT2837	0.37	-1.2
3,540,101	-		BT2837	0.39	-2.1
3,540,146	-		BT2837	0.44	-1.2
3,540,219	+		BT2837	0.51	-2.9
3,540,220	-		BT2837	0.51	-1.2
3,540,220	-		BT2837	0.51	-0.8
3,540,273	+		BT2837	0.56	-0.7
3,540,526	-		BT2837	0.81	-1.8
3,540,526	-		BT2837	0.81	-1.0
3,540,606	+		BT2837	0.89	-1.8
3,540,606	+		BT2837	0.89	-2.8
3,540,606	+		BT2837	0.89	+0.0
3,540,606	+		BT2837	0.89	-2.8
3,540,607	-		BT2837	0.89	+0.3
3,540,610	+		BT2837	0.90	-1.6
3,540,611	-		BT2837	0.90	-3.4
3,540,611	-		BT2837	0.90	-0.7
3,540,661	+				-2.1
3,540,696	+				-1.7
3,540,788	-				+0.5
3,540,798	+				-0.8
3,540,798	+				+0.4
3,540,799	-				-1.5
3,540,839	+				-2.1
3,540,850	+				-0.1
3,540,851	-				-1.0
3,540,851	-				-2.1
3,540,861	-				-2.2
3,540,897	+				+0.3
3,540,898	-				-0.2
3,540,898	-				-2.6