Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2687

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
3,348,164	+		BT2686	0.74	-2.1
3,348,165	-		BT2686	0.74	-1.3
3,348,166	+		BT2686	0.74	-0.4
3,348,249	+		BT2686	0.77	-0.7
3,348,253	-		BT2686	0.77	-2.2
3,348,308	-		BT2686	0.79	+1.3
3,348,308	-		BT2686	0.79	-1.5
3,348,368	+		BT2686	0.81	-2.3
3,348,368	+		BT2686	0.81	-2.8
3,348,368	+		BT2686	0.81	-3.8
3,348,425	-		BT2686	0.82	-1.7
3,348,482	+		BT2686	0.84	-2.7
3,348,657	+		BT2686	0.90	-2.7
3,348,657	+		BT2686	0.90	-3.7
3,348,680	+				-1.3
3,348,743	+				-0.8
3,348,743	+				-2.7
3,348,755	+				-1.8
3,348,805	-				-3.2
3,348,852	-				-0.9
3,349,171	+		BT2687	0.16	-2.1
3,349,177	+		BT2687	0.16	-2.1
3,349,281	+		BT2687	0.27	-2.6
3,349,352	-		BT2687	0.34	-1.5
3,349,391	-		BT2687	0.37	-1.0
3,349,391	-		BT2687	0.37	-1.2
3,349,393	-		BT2687	0.38	-0.7
3,349,516	+		BT2687	0.50	-2.5
3,349,516	+		BT2687	0.50	-5.4
3,349,581	-		BT2687	0.56	-0.4
3,349,691	+		BT2687	0.67	-3.2
3,349,794	+		BT2687	0.77	-1.3
3,349,857	+		BT2687	0.83	-0.6
3,349,858	-		BT2687	0.83	-2.7
3,349,868	+		BT2687	0.84	-1.0
3,349,869	-		BT2687	0.84	+0.3
3,349,986	+				-3.0
3,350,008	-				-2.1
3,350,035	-				-1.9
3,350,055	-				-1.0
3,350,095	-				-1.0
3,350,130	+				-2.8
3,350,130	+				-1.1
3,350,295	-		BT2688	0.18	-0.2
3,350,310	+		BT2688	0.19	-1.8
3,350,402	+		BT2688	0.25	-3.1
3,350,402	+		BT2688	0.25	-2.0
3,350,451	+		BT2688	0.29	-2.4
3,350,498	+		BT2688	0.33	-2.8
3,350,499	-		BT2688	0.33	-1.0
3,350,599	-		BT2688	0.40	-2.1
3,350,671	-		BT2688	0.45	-1.5
3,350,685	+		BT2688	0.46	-1.3
3,350,874	+		BT2688	0.61	-1.7
3,350,901	+		BT2688	0.63	-0.7
3,350,927	+		BT2688	0.64	-3.2
3,350,938	+		BT2688	0.65	-1.0