Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2614

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
3,251,635	-		BT2613	0.18	-1.0
3,251,635	-		BT2613	0.18	-0.1
3,251,657	+		BT2613	0.20	+1.3
3,251,684	-		BT2613	0.22	-3.4
3,251,690	-		BT2613	0.23	-2.1
3,251,858	-		BT2613	0.37	+1.1
3,251,870	-		BT2613	0.38	-2.3
3,251,939	-		BT2613	0.44	-0.3
3,252,006	-		BT2613	0.50	-1.0
3,252,006	-		BT2613	0.50	-0.4
3,252,153	-		BT2613	0.63	-1.9
3,252,172	-		BT2613	0.65	-0.7
3,252,271	-		BT2613	0.73	-0.3
3,252,271	-		BT2613	0.73	-2.6
3,252,271	-		BT2613	0.73	-1.0
3,252,381	-		BT2613	0.83	-0.9
3,252,422	-		BT2613	0.86	-0.9
3,252,482	-				-0.1
3,252,537	-				+0.6
3,252,607	-				-1.7
3,252,613	-				-0.7
3,252,617	-				-2.2
3,252,617	-				-2.7
3,252,617	-				-1.1
3,252,620	-				+0.6
3,252,700	-				-2.7
3,252,708	-				+0.1
3,252,708	-				-2.3
3,252,708	-				-0.4
3,252,708	-				+0.3
3,252,714	-				-1.9
3,252,714	-				-2.4
3,252,772	+				-2.6
3,252,787	+				-0.5
3,252,788	-				-0.7
3,252,813	+				-1.0
3,252,832	+		BT2614	0.10	-0.7
3,252,832	+		BT2614	0.10	-0.9
3,252,999	+		BT2614	0.19	-2.4
3,253,060	-		BT2614	0.22	-0.3
3,253,061	+		BT2614	0.22	-0.5
3,253,200	+		BT2614	0.28	+0.4
3,253,200	+		BT2614	0.28	+0.3
3,253,201	-		BT2614	0.28	-0.3
3,253,228	+		BT2614	0.30	-2.1
3,253,229	-		BT2614	0.30	-1.7
3,253,229	-		BT2614	0.30	-2.6
3,253,240	+		BT2614	0.30	-0.3
3,253,262	+		BT2614	0.31	-0.1
3,253,273	-		BT2614	0.32	-3.2
3,253,277	-		BT2614	0.32	-0.5
3,253,277	-		BT2614	0.32	-2.4
3,253,284	+		BT2614	0.32	-0.6
3,253,284	+		BT2614	0.32	+0.6
3,253,284	+		BT2614	0.32	-2.3
3,253,285	-		BT2614	0.33	-2.7
3,253,308	-		BT2614	0.34	-0.9
3,253,317	-		BT2614	0.34	+0.2
3,253,317	-		BT2614	0.34	+0.3
3,253,322	+		BT2614	0.34	-2.5
3,253,329	-		BT2614	0.35	-0.4
3,253,350	+		BT2614	0.36	+0.4
3,253,358	+		BT2614	0.36	+1.3
3,253,361	-		BT2614	0.36	-0.7
3,253,372	-		BT2614	0.37	-0.9
3,253,389	-		BT2614	0.38	-1.3
3,253,395	+		BT2614	0.38	-1.1
3,253,395	+		BT2614	0.38	-1.7
3,253,395	+		BT2614	0.38	-2.8
3,253,450	+		BT2614	0.41	-1.3
3,253,493	+		BT2614	0.43	-2.6
3,253,628	+		BT2614	0.49	-2.5
3,253,629	-		BT2614	0.49	-0.3
3,253,633	+		BT2614	0.50	-0.7
3,253,681	-		BT2614	0.52	+2.3
3,253,687	+		BT2614	0.52	-1.3
3,253,700	+		BT2614	0.53	-1.8
3,253,922	-		BT2614	0.64	-1.7
3,253,963	-		BT2614	0.66	+0.2
3,254,025	+		BT2614	0.69	+0.3
3,254,027	+		BT2614	0.69	+0.1
3,254,069	-		BT2614	0.71	-1.0
3,254,076	+		BT2614	0.71	-0.8
3,254,076	+				+1.3
3,254,167	+		BT2614	0.76	-0.7
3,254,382	+		BT2614	0.86	-0.3
3,254,383	-		BT2614	0.86	+0.2
3,254,415	+		BT2614	0.88	+1.3
3,254,416	-		BT2614	0.88	-2.1
3,254,529	-				-1.3
3,254,664	-				-0.9
3,254,724	-				-3.4
3,254,724	-				-1.0
3,254,827	-				-0.7
3,254,827	-				-2.4
3,254,827	-				+0.3
3,254,830	+				+0.3
3,254,835	-				-1.3
3,254,835	-				+0.3
3,254,874	-				-1.9
3,254,906	-				-0.7
3,254,912	+				-2.1
3,254,912	+				-2.1
3,254,912	+				-0.2
3,254,913	-				-1.3
3,254,972	+		BT2615	0.11	-1.0
3,254,972	+		BT2615	0.11	+0.5
3,254,973	-		BT2615	0.11	+0.3
3,255,029	+		BT2615	0.15	+0.5
3,255,029	+		BT2615	0.15	+0.1
3,255,064	+		BT2615	0.18	-0.5
3,255,064	+		BT2615	0.18	-3.6
3,255,065	-		BT2615	0.18	-1.9
3,255,085	-		BT2615	0.20	-2.0
3,255,090	-		BT2615	0.20	+0.7
3,255,096	+		BT2615	0.21	+2.9
3,255,096	+		BT2615	0.21	+0.3
3,255,141	+		BT2615	0.24	-3.5
3,255,142	-		BT2615	0.24	+0.0
3,255,226	+		BT2615	0.31	-0.3
3,255,226	+		BT2615	0.31	-2.0
3,255,230	+		BT2615	0.31	-1.7
3,255,230	+		BT2615	0.31	-0.8
3,255,230	+		BT2615	0.31	-1.6
3,255,231	-		BT2615	0.31	+0.6
3,255,231	-		BT2615	0.31	+0.6
3,255,231	-		BT2615	0.31	-0.3
3,255,231	-		BT2615	0.31	-0.0
3,255,290	-		BT2615	0.36	-1.9
3,255,320	-		BT2615	0.38	-1.1
3,255,392	+		BT2615	0.44	-0.2
3,255,393	-		BT2615	0.44	-2.1
3,255,394	+		BT2615	0.44	-1.2
3,255,408	-		BT2615	0.45	-1.9
3,255,442	+		BT2615	0.47	-1.5
3,255,443	-		BT2615	0.47	-2.9
3,255,443	-		BT2615	0.47	-0.4
3,255,496	+		BT2615	0.52	-0.6
3,255,497	-		BT2615	0.52	-1.2
3,255,528	+				+1.3
3,255,529	-		BT2615	0.54	-3.0
3,255,612	+		BT2615	0.61	-1.5
3,255,612	+		BT2615	0.61	-0.3
3,255,612	+		BT2615	0.61	-2.1
3,255,616	+		BT2615	0.61	-0.4
3,255,616	+		BT2615	0.61	-3.3
3,255,617	-		BT2615	0.61	-2.1