Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2280

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
2,859,664	-				-0.1
2,859,678	-				-0.9
2,859,736	+				-1.1
2,859,792	+		BT2279	0.13	-0.5
2,859,799	+		BT2279	0.14	-2.8
2,859,800	-		BT2279	0.14	+0.4
2,859,857	-		BT2279	0.20	-2.1
2,859,858	+		BT2279	0.20	-0.7
2,859,858	+		BT2279	0.20	-1.5
2,859,858	+		BT2279	0.20	-0.1
2,859,863	+		BT2279	0.21	-1.5
2,859,864	-		BT2279	0.21	-2.5
2,859,915	+		BT2279	0.26	-0.9
2,859,925	-		BT2279	0.27	+0.1
2,859,981	+		BT2279	0.33	+0.3
2,859,981	+		BT2279	0.33	-0.7
2,859,982	-		BT2279	0.34	-1.7
2,859,984	-		BT2279	0.34	+0.3
2,859,984	-		BT2279	0.34	-2.1
2,859,994	-		BT2279	0.35	+0.3
2,860,030	+		BT2279	0.39	-1.1
2,860,081	+		BT2279	0.44	-0.7
2,860,082	-		BT2279	0.44	-0.5
2,860,093	+		BT2279	0.46	-2.6
2,860,152	-		BT2279	0.52	-0.7
2,860,156	-		BT2279	0.52	-0.3
2,860,161	+		BT2279	0.53	-2.2
2,860,466	+		BT2279	0.86	-1.3
2,860,479	+		BT2279	0.88	+0.5
2,860,479	+		BT2279	0.88	-1.0
2,860,668	+		BT2280	0.19	+1.3
2,860,668	+		BT2280	0.19	-1.9
2,860,669	-		BT2280	0.20	+0.0
2,860,810	-		BT2280	0.57	-2.1
2,860,856	-		BT2280	0.70	+0.3
2,860,882	-		BT2280	0.77	-1.5
2,860,912	+		BT2280	0.85	-2.1
2,860,979	+				-0.5
2,860,980	-				+0.0
2,860,980	-				+1.0
2,860,980	-				-2.1
2,860,982	+				-0.2
2,860,982	+				-1.4
2,861,036	+				-2.2
2,861,059	+				+0.5
2,861,093	+				+0.3
2,861,093	+				-0.2
2,861,094	-				+1.3
2,861,094	-				-0.3
2,861,142	-				+0.1
2,861,142	-				-0.7
2,861,182	+				+0.7
2,861,182	+				+0.6
2,861,186	+		BT2281	0.11	-1.7
2,861,197	-		BT2281	0.15	+2.3
2,861,304	-		BT2281	0.54	-1.8
2,861,342	-		BT2281	0.68	-1.1
2,861,367	+		BT2281	0.77	+1.3
2,861,367	+		BT2281	0.77	-0.5
2,861,428	+				-0.7
2,861,440	+				+0.0
2,861,441	-				-2.3
2,861,444	-				+0.3
2,861,448	+				+0.1
2,861,521	+				-2.9
2,861,536	-				+0.7
2,861,536	-				-1.7
2,861,536	-				-1.1
2,861,536	-				-0.7
2,861,536	-				-0.3
2,861,561	+				-0.5
2,861,617	-				-0.3
2,861,617	-				+0.2
2,861,668	-				-1.3
2,861,668	-				-3.4
2,861,671	+				-1.1
2,861,683	-				-0.3
2,861,715	+				-1.1
2,861,952	-				+0.3