Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1574

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
1,937,044	-		BT1573	0.39	+1.1
1,937,061	-		BT1573	0.41	-1.8
1,937,066	+		BT1573	0.41	-2.4
1,937,159	+		BT1573	0.48	-1.2
1,937,159	+		BT1573	0.48	+0.1
1,937,160	-		BT1573	0.48	+0.8
1,937,225	-		BT1573	0.53	+0.2
1,937,241	+		BT1573	0.54	-0.8
1,937,246	-		BT1573	0.55	-1.4
1,937,288	+		BT1573	0.58	-2.1
1,937,289	-		BT1573	0.58	-1.2
1,937,315	-		BT1573	0.60	-2.1
1,937,354	-		BT1573	0.63	+1.7
1,937,580	-		BT1573	0.81	-0.9
1,937,615	+		BT1573	0.83	+1.1
1,937,616	-		BT1573	0.84	-1.1
1,937,649	-		BT1573	0.86	-0.5
1,937,688	-		BT1573	0.89	+0.2
1,937,733	+				-0.3
1,937,817	-				-2.1
1,937,834	-				-1.2
1,937,839	+				+0.7
1,937,841	+				-0.9
1,937,853	+				-2.1
1,937,855	+				-1.7
1,937,906	+				+0.5
1,937,906	+				-1.3
1,937,936	-				+0.0
1,937,969	-				-1.7
1,937,976	+				-0.5
1,937,977	-				-1.2
1,938,034	+				-2.2
1,938,034	+				-0.5
1,938,050	-				-0.5
1,938,060	+				-1.1
1,938,071	+		BT1574	0.10	-2.3
1,938,072	-		BT1574	0.10	-2.8
1,938,085	+		BT1574	0.11	-1.9
1,938,121	-		BT1574	0.14	-1.9
1,938,216	-		BT1574	0.20	+0.6
1,938,228	-		BT1574	0.21	+0.1
1,938,320	+		BT1574	0.27	-0.9
1,938,351	+		BT1574	0.30	-0.9
1,938,369	-		BT1574	0.31	-1.2
1,938,373	+		BT1574	0.31	+0.1
1,938,394	+		BT1574	0.33	-2.4
1,938,411	+		BT1574	0.34	-2.2
1,938,411	+		BT1574	0.34	+0.5
1,938,421	+		BT1574	0.34	-2.1
1,938,454	+		BT1574	0.37	-0.5
1,938,455	-		BT1574	0.37	-0.9
1,938,461	-		BT1574	0.37	-0.9
1,938,478	+		BT1574	0.38	-1.2
1,938,495	+		BT1574	0.40	-0.5
1,938,593	-		BT1574	0.46	-0.5
1,938,613	+		BT1574	0.48	-0.1
1,938,694	+		BT1574	0.53	+1.1
1,938,717	-		BT1574	0.55	-0.6
1,938,815	-		BT1574	0.62	-0.9
1,938,817	-		BT1574	0.62	-1.2
1,938,840	+		BT1574	0.64	-0.5
1,938,879	+		BT1574	0.66	-1.9
1,938,879	+		BT1574	0.66	-2.1
1,938,883	+		BT1574	0.67	-2.8
1,938,956	-		BT1574	0.72	-0.9
1,939,029	-		BT1574	0.77	-0.9
1,939,037	+		BT1574	0.77	-3.4
1,939,103	-		BT1574	0.82	-1.5
1,939,167	-		BT1574	0.86	-1.9
1,939,211	-		BT1574	0.90	-1.6
1,939,214	-		BT1574	0.90	-0.9
1,939,286	-				-2.2
1,939,395	+				-1.2
1,939,419	+				-0.5
1,939,419	+				+0.6
1,939,433	+				-0.5
1,939,566	+				-3.1
1,939,664	-				-0.9
1,939,815	+		BT1575	0.24	-2.7
1,939,816	-		BT1575	0.25	-0.9
1,939,900	-		BT1575	0.33	-1.4
1,939,900	-		BT1575	0.33	-2.2
1,940,357	-		BT1575	0.79	-0.5