Experiment: nitrogen source nitrite 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_688 and Pf1N1B4_689 are separated by 41 nucleotides Pf1N1B4_689 and Pf1N1B4_690 are separated by 427 nucleotides Pf1N1B4_690 and Pf1N1B4_691 are separated by 129 nucleotides
Pf1N1B4_688 - FIG00955483: hypothetical protein, at 787,083 to 787,313
_688
Pf1N1B4_689 - FIG00954888: hypothetical protein, at 787,355 to 787,708
_689
Pf1N1B4_690 - Transcriptional regulator, AraC family, at 788,136 to 789,065
_690
Pf1N1B4_691 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 789,195 to 790,250
_691
Position (kb) 788
789
790 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.373 kb on + strand at 787.374 kb on - strand at 787.500 kb on + strand, within Pf1N1B4_689 at 787.500 kb on + strand, within Pf1N1B4_689 at 787.500 kb on + strand, within Pf1N1B4_689 at 787.501 kb on - strand, within Pf1N1B4_689 at 787.681 kb on + strand at 787.682 kb on - strand at 787.682 kb on - strand at 787.702 kb on + strand at 787.703 kb on - strand at 787.870 kb on + strand at 787.870 kb on + strand at 788.095 kb on - strand at 788.220 kb on - strand at 788.241 kb on + strand, within Pf1N1B4_690 at 788.241 kb on + strand, within Pf1N1B4_690 at 788.242 kb on - strand at 788.242 kb on - strand, within Pf1N1B4_690 at 788.242 kb on - strand, within Pf1N1B4_690 at 788.242 kb on - strand, within Pf1N1B4_690 at 788.242 kb on - strand, within Pf1N1B4_690 at 788.370 kb on + strand, within Pf1N1B4_690 at 788.371 kb on - strand, within Pf1N1B4_690 at 788.371 kb on - strand, within Pf1N1B4_690 at 788.371 kb on - strand, within Pf1N1B4_690 at 788.371 kb on - strand, within Pf1N1B4_690 at 788.371 kb on - strand, within Pf1N1B4_690 at 788.371 kb on - strand, within Pf1N1B4_690 at 788.379 kb on + strand, within Pf1N1B4_690 at 788.380 kb on - strand, within Pf1N1B4_690 at 788.395 kb on - strand, within Pf1N1B4_690 at 788.395 kb on - strand, within Pf1N1B4_690 at 788.395 kb on - strand, within Pf1N1B4_690 at 788.438 kb on - strand, within Pf1N1B4_690 at 788.438 kb on - strand, within Pf1N1B4_690 at 788.438 kb on - strand, within Pf1N1B4_690 at 788.438 kb on - strand, within Pf1N1B4_690 at 788.562 kb on + strand, within Pf1N1B4_690 at 788.562 kb on + strand, within Pf1N1B4_690 at 788.562 kb on + strand, within Pf1N1B4_690 at 788.562 kb on + strand, within Pf1N1B4_690 at 788.563 kb on - strand, within Pf1N1B4_690 at 788.781 kb on + strand, within Pf1N1B4_690 at 788.782 kb on - strand, within Pf1N1B4_690 at 788.782 kb on - strand, within Pf1N1B4_690 at 788.782 kb on - strand, within Pf1N1B4_690 at 788.886 kb on + strand, within Pf1N1B4_690 at 789.003 kb on + strand at 789.003 kb on + strand at 789.130 kb on + strand at 789.130 kb on + strand at 789.131 kb on - strand at 789.282 kb on - strand at 789.328 kb on - strand, within Pf1N1B4_691 at 789.328 kb on - strand, within Pf1N1B4_691 at 789.552 kb on - strand, within Pf1N1B4_691 at 789.552 kb on - strand, within Pf1N1B4_691 at 789.586 kb on + strand, within Pf1N1B4_691 at 789.587 kb on - strand, within Pf1N1B4_691 at 790.025 kb on + strand, within Pf1N1B4_691 at 790.044 kb on - strand, within Pf1N1B4_691 at 790.044 kb on - strand, within Pf1N1B4_691
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM remove 787,269 + Pf1N1B4_688 0.81 -0.0 787,269 + Pf1N1B4_688 0.81 -1.3 787,269 + Pf1N1B4_688 0.81 +0.2 787,269 + Pf1N1B4_688 0.81 -0.5 787,269 + Pf1N1B4_688 0.81 +0.2 787,373 + +0.3 787,374 - +0.4 787,500 + Pf1N1B4_689 0.41 +0.7 787,500 + Pf1N1B4_689 0.41 -1.0 787,500 + Pf1N1B4_689 0.41 -0.1 787,501 - Pf1N1B4_689 0.41 -0.1 787,681 + -0.6 787,682 - -0.3 787,682 - -0.3 787,702 + -0.3 787,703 - +0.0 787,870 + -1.1 787,870 + -0.5 788,095 - +0.1 788,220 - +0.3 788,241 + Pf1N1B4_690 0.11 +0.7 788,241 + Pf1N1B4_690 0.11 +1.9 788,242 - +0.8 788,242 - Pf1N1B4_690 0.11 -0.2 788,242 - Pf1N1B4_690 0.11 +0.4 788,242 - Pf1N1B4_690 0.11 -0.9 788,242 - Pf1N1B4_690 0.11 +0.4 788,370 + Pf1N1B4_690 0.25 +0.8 788,371 - Pf1N1B4_690 0.25 -0.0 788,371 - Pf1N1B4_690 0.25 -0.4 788,371 - Pf1N1B4_690 0.25 -0.4 788,371 - Pf1N1B4_690 0.25 +1.5 788,371 - Pf1N1B4_690 0.25 -0.5 788,371 - Pf1N1B4_690 0.25 +1.7 788,379 + Pf1N1B4_690 0.26 +1.4 788,380 - Pf1N1B4_690 0.26 -1.8 788,395 - Pf1N1B4_690 0.28 -0.2 788,395 - Pf1N1B4_690 0.28 +0.5 788,395 - Pf1N1B4_690 0.28 +2.7 788,438 - Pf1N1B4_690 0.32 +2.9 788,438 - Pf1N1B4_690 0.32 -0.4 788,438 - Pf1N1B4_690 0.32 +0.5 788,438 - Pf1N1B4_690 0.32 -1.6 788,562 + Pf1N1B4_690 0.46 +1.3 788,562 + Pf1N1B4_690 0.46 +1.9 788,562 + Pf1N1B4_690 0.46 -0.2 788,562 + Pf1N1B4_690 0.46 -0.9 788,563 - Pf1N1B4_690 0.46 +0.9 788,781 + Pf1N1B4_690 0.69 +1.2 788,782 - Pf1N1B4_690 0.69 -0.7 788,782 - Pf1N1B4_690 0.69 -0.3 788,782 - Pf1N1B4_690 0.69 -1.0 788,886 + Pf1N1B4_690 0.81 -2.0 789,003 + +0.5 789,003 + +0.5 789,130 + -1.7 789,130 + -0.7 789,131 - +4.9 789,282 - +0.2 789,328 - Pf1N1B4_691 0.13 -2.0 789,328 - Pf1N1B4_691 0.13 +0.8 789,552 - Pf1N1B4_691 0.34 +0.8 789,552 - Pf1N1B4_691 0.34 -1.2 789,586 + Pf1N1B4_691 0.37 -0.0 789,587 - Pf1N1B4_691 0.37 -0.1 790,025 + Pf1N1B4_691 0.79 -0.9 790,044 - Pf1N1B4_691 0.80 -1.1 790,044 - Pf1N1B4_691 0.80 -0.6
Or see this region's nucleotide sequence