Experiment: KB with 2,5-Dihydroxybenzoic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0595 and Psyr_0596 are separated by 99 nucleotides Psyr_0596 and Psyr_0597 are separated by 499 nucleotides
Psyr_0595: Psyr_0595 - Nicotinate phosphoribosyltransferase, at 682,976 to 684,199
_0595
Psyr_0596: Psyr_0596 - transcriptional regulator, LysR family, at 684,299 to 685,204
_0596
Psyr_0597: Psyr_0597 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 685,704 to 686,840
_0597
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 683.373 kb on + strand, within Psyr_0595 at 683.374 kb on - strand, within Psyr_0595 at 683.374 kb on - strand, within Psyr_0595 at 683.742 kb on + strand, within Psyr_0595 at 683.743 kb on - strand, within Psyr_0595 at 683.743 kb on - strand, within Psyr_0595 at 683.996 kb on + strand, within Psyr_0595 at 684.106 kb on - strand at 684.142 kb on - strand at 684.142 kb on - strand at 684.142 kb on - strand at 684.390 kb on + strand, within Psyr_0596 at 684.390 kb on + strand, within Psyr_0596 at 684.390 kb on + strand at 684.390 kb on + strand, within Psyr_0596 at 684.390 kb on + strand, within Psyr_0596 at 684.391 kb on - strand, within Psyr_0596 at 684.391 kb on - strand, within Psyr_0596 at 684.391 kb on - strand, within Psyr_0596 at 684.393 kb on + strand, within Psyr_0596 at 684.394 kb on - strand, within Psyr_0596 at 684.404 kb on - strand, within Psyr_0596 at 684.421 kb on - strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.571 kb on - strand, within Psyr_0596 at 684.759 kb on + strand, within Psyr_0596 at 684.759 kb on + strand, within Psyr_0596 at 684.760 kb on - strand, within Psyr_0596 at 684.760 kb on - strand, within Psyr_0596 at 685.241 kb on + strand at 685.241 kb on + strand at 685.242 kb on - strand at 685.255 kb on - strand at 685.267 kb on - strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.296 kb on - strand at 685.296 kb on - strand at 685.296 kb on - strand at 685.296 kb on - strand at 685.296 kb on - strand at 685.308 kb on + strand at 685.308 kb on + strand at 685.309 kb on - strand at 685.311 kb on + strand at 685.311 kb on + strand at 685.444 kb on + strand at 685.444 kb on + strand at 685.482 kb on - strand at 685.649 kb on + strand at 685.649 kb on + strand at 685.650 kb on - strand at 685.650 kb on - strand at 685.684 kb on + strand at 685.685 kb on - strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.712 kb on + strand at 685.713 kb on - strand at 685.713 kb on - strand at 685.713 kb on - strand at 685.719 kb on + strand at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 686.049 kb on + strand, within Psyr_0597 at 686.049 kb on + strand, within Psyr_0597 at 686.049 kb on + strand, within Psyr_0597 at 686.050 kb on - strand, within Psyr_0597 at 686.050 kb on - strand, within Psyr_0597 at 686.050 kb on - strand, within Psyr_0597 at 686.050 kb on - strand, within Psyr_0597 at 686.076 kb on - strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 2,5-Dihydroxybenzoic Acid 10 mM remove 683,373 + Psyr_0595 0.32 +1.0 683,374 - Psyr_0595 0.33 -0.0 683,374 - Psyr_0595 0.33 -0.4 683,742 + Psyr_0595 0.63 -0.1 683,743 - Psyr_0595 0.63 +0.3 683,743 - Psyr_0595 0.63 +0.6 683,996 + Psyr_0595 0.83 -0.4 684,106 - -0.2 684,142 - +0.5 684,142 - -1.6 684,142 - -1.2 684,390 + Psyr_0596 0.10 -0.0 684,390 + Psyr_0596 0.10 +0.3 684,390 + +2.3 684,390 + Psyr_0596 0.10 +0.7 684,390 + Psyr_0596 0.10 +0.8 684,391 - Psyr_0596 0.10 -0.9 684,391 - Psyr_0596 0.10 +1.0 684,391 - Psyr_0596 0.10 -0.3 684,393 + Psyr_0596 0.10 -0.9 684,394 - Psyr_0596 0.10 +0.8 684,404 - Psyr_0596 0.12 -0.2 684,421 - Psyr_0596 0.13 -0.4 684,523 + Psyr_0596 0.25 +0.6 684,523 + Psyr_0596 0.25 -0.6 684,523 + Psyr_0596 0.25 +1.0 684,523 + Psyr_0596 0.25 -1.8 684,523 + Psyr_0596 0.25 -0.3 684,523 + Psyr_0596 0.25 +1.5 684,523 + Psyr_0596 0.25 +0.1 684,523 + Psyr_0596 0.25 -0.0 684,523 + Psyr_0596 0.25 -0.6 684,523 + Psyr_0596 0.25 +0.2 684,523 + Psyr_0596 0.25 -0.2 684,523 + Psyr_0596 0.25 +0.2 684,523 + Psyr_0596 0.25 -1.7 684,523 + Psyr_0596 0.25 -0.8 684,524 - Psyr_0596 0.25 -1.7 684,524 - Psyr_0596 0.25 +2.3 684,524 - Psyr_0596 0.25 -0.2 684,524 - Psyr_0596 0.25 +0.6 684,524 - Psyr_0596 0.25 -0.0 684,524 - Psyr_0596 0.25 -0.4 684,524 - Psyr_0596 0.25 +1.2 684,524 - Psyr_0596 0.25 -0.2 684,524 - Psyr_0596 0.25 -0.2 684,524 - Psyr_0596 0.25 -0.4 684,524 - Psyr_0596 0.25 +0.9 684,524 - Psyr_0596 0.25 +2.0 684,524 - Psyr_0596 0.25 +0.4 684,524 - Psyr_0596 0.25 +0.6 684,524 - Psyr_0596 0.25 -0.5 684,524 - Psyr_0596 0.25 -0.8 684,524 - Psyr_0596 0.25 +1.3 684,524 - Psyr_0596 0.25 +0.3 684,524 - Psyr_0596 0.25 +0.1 684,525 + Psyr_0596 0.25 -0.1 684,525 + Psyr_0596 0.25 -0.2 684,525 + Psyr_0596 0.25 +1.4 684,525 + Psyr_0596 0.25 +0.0 684,525 + Psyr_0596 0.25 -0.5 684,525 + Psyr_0596 0.25 +0.1 684,525 + Psyr_0596 0.25 +0.4 684,525 + Psyr_0596 0.25 -0.2 684,525 + Psyr_0596 0.25 +1.1 684,525 + Psyr_0596 0.25 -0.2 684,525 + Psyr_0596 0.25 -0.0 684,525 + Psyr_0596 0.25 +0.6 684,525 + Psyr_0596 0.25 -0.1 684,525 + Psyr_0596 0.25 +0.7 684,525 + Psyr_0596 0.25 -0.1 684,525 + Psyr_0596 0.25 +1.2 684,525 + Psyr_0596 0.25 +0.8 684,525 + Psyr_0596 0.25 -0.0 684,525 + Psyr_0596 0.25 +1.2 684,525 + Psyr_0596 0.25 +0.9 684,525 + Psyr_0596 0.25 -0.7 684,526 - Psyr_0596 0.25 +0.6 684,526 - Psyr_0596 0.25 -0.7 684,526 - Psyr_0596 0.25 +0.4 684,526 - Psyr_0596 0.25 +1.2 684,526 - Psyr_0596 0.25 -0.3 684,526 - Psyr_0596 0.25 +0.8 684,526 - Psyr_0596 0.25 -0.6 684,526 - Psyr_0596 0.25 -0.2 684,526 - Psyr_0596 0.25 +1.0 684,526 - Psyr_0596 0.25 +0.4 684,526 - Psyr_0596 0.25 -0.3 684,526 - Psyr_0596 0.25 +0.3 684,526 - Psyr_0596 0.25 -0.7 684,526 - Psyr_0596 0.25 -0.1 684,526 - Psyr_0596 0.25 -0.9 684,526 - Psyr_0596 0.25 +0.1 684,526 - Psyr_0596 0.25 +0.4 684,526 - Psyr_0596 0.25 -1.5 684,526 - Psyr_0596 0.25 -2.3 684,526 - Psyr_0596 0.25 -0.3 684,526 - Psyr_0596 0.25 +0.1 684,526 - Psyr_0596 0.25 +1.2 684,526 - Psyr_0596 0.25 -0.2 684,526 - Psyr_0596 0.25 +0.9 684,526 - Psyr_0596 0.25 -0.0 684,526 - Psyr_0596 0.25 -0.2 684,526 - Psyr_0596 0.25 +0.7 684,526 - Psyr_0596 0.25 +0.3 684,571 - Psyr_0596 0.30 +0.6 684,759 + Psyr_0596 0.51 +1.0 684,759 + Psyr_0596 0.51 +2.2 684,760 - Psyr_0596 0.51 -0.5 684,760 - Psyr_0596 0.51 +0.9 685,241 + -0.6 685,241 + +1.0 685,242 - +0.2 685,255 - -0.6 685,267 - -1.3 685,295 + +0.1 685,295 + +0.9 685,295 + +0.3 685,295 + -0.3 685,295 + -0.9 685,295 + +0.6 685,296 - +0.3 685,296 - +0.6 685,296 - -0.8 685,296 - -0.4 685,296 - -0.1 685,308 + +0.1 685,308 + +0.1 685,309 - -0.6 685,311 + +0.9 685,311 + +0.1 685,444 + +0.7 685,444 + +0.6 685,482 - -0.2 685,649 + +0.1 685,649 + -0.0 685,650 - +0.6 685,650 - +1.5 685,684 + +1.4 685,685 - -0.9 685,703 + +0.1 685,703 + -0.5 685,703 + -0.0 685,703 + +0.4 685,703 + -0.2 685,703 + +0.5 685,703 + +0.5 685,703 + -0.2 685,703 + -0.3 685,703 + -0.2 685,703 + +0.5 685,703 + +1.1 685,703 + +0.8 685,703 + +0.3 685,704 - +0.3 685,704 - -0.1 685,704 - +0.1 685,704 - -0.1 685,704 - -1.0 685,704 - +0.5 685,704 - +1.9 685,704 - +0.1 685,704 - -0.0 685,704 - +1.4 685,704 - +0.8 685,704 - +0.3 685,704 - -0.4 685,704 - -2.8 685,704 - -0.8 685,704 - +0.3 685,704 - -0.0 685,712 + -0.4 685,713 - -0.4 685,713 - +1.3 685,713 - +1.0 685,719 + +0.3 685,845 + Psyr_0597 0.12 +0.8 685,845 + Psyr_0597 0.12 +0.3 685,845 + Psyr_0597 0.12 -0.9 685,845 + Psyr_0597 0.12 -0.0 685,845 + Psyr_0597 0.12 -1.7 685,845 + Psyr_0597 0.12 -0.1 685,845 + Psyr_0597 0.12 +0.6 685,845 + Psyr_0597 0.12 +0.2 685,845 + Psyr_0597 0.12 +0.3 685,845 + Psyr_0597 0.12 +0.3 685,845 + Psyr_0597 0.12 +0.5 685,846 - Psyr_0597 0.12 -2.5 685,846 - Psyr_0597 0.12 -0.0 685,846 - Psyr_0597 0.12 +0.1 685,846 - Psyr_0597 0.12 -0.0 685,846 - Psyr_0597 0.12 +0.3 685,846 - Psyr_0597 0.12 -0.8 685,846 - Psyr_0597 0.12 -0.7 685,846 - Psyr_0597 0.12 +0.3 685,846 - Psyr_0597 0.12 +2.0 685,846 - Psyr_0597 0.12 +1.8 685,846 - Psyr_0597 0.12 -0.1 685,846 - Psyr_0597 0.12 +1.7 685,846 - Psyr_0597 0.12 -0.7 686,049 + Psyr_0597 0.30 +0.5 686,049 + Psyr_0597 0.30 -0.3 686,049 + Psyr_0597 0.30 -0.2 686,050 - Psyr_0597 0.30 +0.2 686,050 - Psyr_0597 0.30 -0.5 686,050 - Psyr_0597 0.30 -0.2 686,050 - Psyr_0597 0.30 +0.1 686,076 - Psyr_0597 0.33 +0.8 686,123 + Psyr_0597 0.37 -0.6 686,123 + Psyr_0597 0.37 -1.2 686,123 + Psyr_0597 0.37 -0.0 686,123 + Psyr_0597 0.37 -1.7 686,123 + Psyr_0597 0.37 +0.2 686,123 + Psyr_0597 0.37 +0.2 686,123 + Psyr_0597 0.37 +1.3 686,123 + Psyr_0597 0.37 +0.4 686,124 - Psyr_0597 0.37 +0.4 686,124 - Psyr_0597 0.37 +1.7 686,124 - Psyr_0597 0.37 +1.0 686,124 - Psyr_0597 0.37 -0.4 686,124 - Psyr_0597 0.37 -1.6 686,124 - Psyr_0597 0.37 +1.2 686,175 + Psyr_0597 0.41 +0.2 686,175 + Psyr_0597 0.41 -1.4 686,175 + Psyr_0597 0.41 -0.4 686,175 + Psyr_0597 0.41 -0.3 686,175 + Psyr_0597 0.41 -0.5 686,176 - Psyr_0597 0.42 +0.8 686,176 - Psyr_0597 0.42 +0.5 686,176 - Psyr_0597 0.42 -0.4 686,176 - Psyr_0597 0.42 -0.4 686,176 - Psyr_0597 0.42 -0.2
Or see this region's nucleotide sequence