Experiment: nitrogen source nitrate 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4932 and Pf1N1B4_4933 are separated by 171 nucleotides Pf1N1B4_4933 and Pf1N1B4_4934 are separated by 224 nucleotides Pf1N1B4_4934 and Pf1N1B4_4935 overlap by 4 nucleotides
Pf1N1B4_4932 - Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83), at 5,466,700 to 5,467,779
_4932
Pf1N1B4_4933 - FIG00955097: hypothetical protein, at 5,467,951 to 5,468,175
_4933
Pf1N1B4_4934 - DNA damage response nuclease (from data) , at 5,468,400 to 5,470,052
_4934
Pf1N1B4_4935 - DinG family ATP-dependent helicase CPE1197, at 5,470,049 to 5,472,328
_4935
Position (kb)
5468
5469
5470
5471 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5467.567 kb on + strand, within Pf1N1B4_4932 at 5467.567 kb on + strand, within Pf1N1B4_4932 at 5467.568 kb on - strand, within Pf1N1B4_4932 at 5467.926 kb on - strand at 5468.072 kb on + strand at 5468.175 kb on + strand at 5468.176 kb on - strand at 5468.347 kb on - strand at 5468.347 kb on - strand at 5468.347 kb on - strand at 5468.353 kb on + strand at 5468.408 kb on - strand at 5468.408 kb on - strand at 5468.488 kb on + strand at 5468.610 kb on + strand, within Pf1N1B4_4934 at 5468.611 kb on - strand, within Pf1N1B4_4934 at 5468.963 kb on + strand, within Pf1N1B4_4934 at 5468.964 kb on - strand, within Pf1N1B4_4934 at 5469.349 kb on + strand, within Pf1N1B4_4934 at 5469.519 kb on + strand, within Pf1N1B4_4934 at 5469.519 kb on + strand at 5469.520 kb on - strand, within Pf1N1B4_4934 at 5469.705 kb on + strand, within Pf1N1B4_4934 at 5469.706 kb on - strand, within Pf1N1B4_4934 at 5469.706 kb on - strand, within Pf1N1B4_4934 at 5469.730 kb on - strand at 5469.764 kb on - strand at 5470.055 kb on + strand at 5470.295 kb on + strand, within Pf1N1B4_4935 at 5470.296 kb on - strand at 5470.361 kb on + strand, within Pf1N1B4_4935 at 5470.479 kb on + strand at 5470.479 kb on + strand, within Pf1N1B4_4935 at 5470.929 kb on - strand at 5471.031 kb on - strand at 5471.031 kb on - strand, within Pf1N1B4_4935
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM remove 5,467,567 + Pf1N1B4_4932 0.80 -0.7 5,467,567 + Pf1N1B4_4932 0.80 -2.4 5,467,568 - Pf1N1B4_4932 0.80 +0.3 5,467,926 - +0.3 5,468,072 + -1.4 5,468,175 + -1.6 5,468,176 - -0.0 5,468,347 - +0.2 5,468,347 - -1.4 5,468,347 - -0.1 5,468,353 + -1.5 5,468,408 - +1.3 5,468,408 - +0.6 5,468,488 + -1.3 5,468,610 + Pf1N1B4_4934 0.13 -0.9 5,468,611 - Pf1N1B4_4934 0.13 +1.1 5,468,963 + Pf1N1B4_4934 0.34 +0.1 5,468,964 - Pf1N1B4_4934 0.34 +1.1 5,469,349 + Pf1N1B4_4934 0.57 +1.3 5,469,519 + Pf1N1B4_4934 0.68 -0.0 5,469,519 + -0.1 5,469,520 - Pf1N1B4_4934 0.68 +0.3 5,469,705 + Pf1N1B4_4934 0.79 +0.9 5,469,706 - Pf1N1B4_4934 0.79 +0.6 5,469,706 - Pf1N1B4_4934 0.79 +1.8 5,469,730 - +1.6 5,469,764 - +1.2 5,470,055 + +1.0 5,470,295 + Pf1N1B4_4935 0.11 -0.9 5,470,296 - +0.3 5,470,361 + Pf1N1B4_4935 0.14 -1.4 5,470,479 + -1.8 5,470,479 + Pf1N1B4_4935 0.19 -0.3 5,470,929 - -0.7 5,471,031 - -0.6 5,471,031 - Pf1N1B4_4935 0.43 -0.6
Or see this region's nucleotide sequence