Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004713 and ABIE53_004714 are separated by 62 nucleotides ABIE53_004714 and ABIE53_004715 overlap by 4 nucleotides
ABIE53_004713: ABIE53_004713 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 904,666 to 905,190
_004713
ABIE53_004714: ABIE53_004714 - aryl-alcohol dehydrogenase-like predicted oxidoreductase, at 905,253 to 906,290
_004714
ABIE53_004715: ABIE53_004715 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 906,287 to 907,726
_004715
Position (kb) 905
906
907 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 904.426 kb on + strand at 904.427 kb on - strand at 904.427 kb on - strand at 904.427 kb on - strand at 904.478 kb on + strand at 904.533 kb on + strand at 904.534 kb on - strand at 904.583 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.648 kb on + strand at 904.648 kb on + strand at 904.649 kb on - strand at 904.649 kb on - strand at 904.649 kb on - strand at 904.673 kb on + strand at 904.695 kb on + strand at 904.696 kb on - strand at 904.737 kb on + strand, within ABIE53_004713 at 904.737 kb on + strand, within ABIE53_004713 at 904.737 kb on + strand, within ABIE53_004713 at 904.737 kb on + strand, within ABIE53_004713 at 904.738 kb on - strand, within ABIE53_004713 at 904.738 kb on - strand, within ABIE53_004713 at 904.738 kb on - strand, within ABIE53_004713 at 904.738 kb on - strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.873 kb on + strand, within ABIE53_004713 at 904.874 kb on - strand, within ABIE53_004713 at 904.874 kb on - strand, within ABIE53_004713 at 904.874 kb on - strand, within ABIE53_004713 at 904.874 kb on - strand, within ABIE53_004713 at 905.075 kb on - strand, within ABIE53_004713 at 905.171 kb on - strand at 905.171 kb on - strand at 905.171 kb on - strand at 905.235 kb on + strand at 905.235 kb on + strand at 905.235 kb on + strand at 905.236 kb on - strand at 905.236 kb on - strand at 905.236 kb on - strand at 905.236 kb on - strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.259 kb on + strand at 905.260 kb on - strand at 905.427 kb on + strand, within ABIE53_004714 at 905.517 kb on + strand, within ABIE53_004714 at 905.532 kb on + strand, within ABIE53_004714 at 905.533 kb on - strand, within ABIE53_004714 at 905.610 kb on + strand, within ABIE53_004714 at 905.610 kb on + strand, within ABIE53_004714 at 905.610 kb on + strand, within ABIE53_004714 at 905.611 kb on - strand, within ABIE53_004714 at 905.611 kb on - strand, within ABIE53_004714 at 905.611 kb on - strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.622 kb on + strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.623 kb on - strand, within ABIE53_004714 at 905.709 kb on + strand, within ABIE53_004714 at 905.709 kb on + strand, within ABIE53_004714 at 905.710 kb on - strand, within ABIE53_004714 at 905.710 kb on - strand, within ABIE53_004714 at 905.710 kb on - strand, within ABIE53_004714 at 905.711 kb on + strand, within ABIE53_004714 at 905.711 kb on + strand, within ABIE53_004714 at 905.712 kb on - strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.730 kb on + strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.731 kb on - strand, within ABIE53_004714 at 905.783 kb on + strand, within ABIE53_004714 at 905.783 kb on + strand, within ABIE53_004714 at 905.784 kb on - strand, within ABIE53_004714 at 905.821 kb on - strand, within ABIE53_004714 at 905.851 kb on - strand, within ABIE53_004714 at 906.183 kb on + strand, within ABIE53_004714 at 906.183 kb on + strand, within ABIE53_004714 at 906.183 kb on + strand, within ABIE53_004714 at 906.184 kb on - strand, within ABIE53_004714 at 906.184 kb on - strand, within ABIE53_004714 at 906.314 kb on + strand at 906.314 kb on + strand at 906.314 kb on + strand at 906.314 kb on + strand at 906.314 kb on + strand at 906.314 kb on + strand at 906.314 kb on + strand at 906.314 kb on + strand at 906.314 kb on + strand at 906.315 kb on - strand at 906.315 kb on - strand at 906.315 kb on - strand at 906.315 kb on - strand at 906.332 kb on + strand at 906.333 kb on - strand at 906.333 kb on - strand at 906.351 kb on - strand at 906.351 kb on - strand at 906.351 kb on - strand at 907.010 kb on - strand, within ABIE53_004715 at 907.154 kb on + strand, within ABIE53_004715 at 907.154 kb on + strand, within ABIE53_004715 at 907.154 kb on + strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.173 kb on - strand, within ABIE53_004715 at 907.173 kb on - strand, within ABIE53_004715
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 904,426 + +1.9 904,427 - +0.6 904,427 - +0.6 904,427 - +1.8 904,478 + -2.0 904,533 + -0.3 904,534 - -1.4 904,583 + +0.9 904,606 + -1.4 904,606 + +2.3 904,606 + -1.2 904,606 + -1.3 904,606 + -1.0 904,606 + +0.7 904,606 + +1.3 904,606 + -0.6 904,606 + -0.1 904,607 - -0.0 904,607 - -1.7 904,607 - -0.9 904,607 - -2.2 904,607 - -2.7 904,607 - -2.0 904,648 + -2.8 904,648 + -2.0 904,649 - +0.2 904,649 - -1.9 904,649 - -2.0 904,673 + +0.1 904,695 + -0.9 904,696 - -0.1 904,737 + ABIE53_004713 0.14 -0.6 904,737 + ABIE53_004713 0.14 +2.2 904,737 + ABIE53_004713 0.14 +0.2 904,737 + ABIE53_004713 0.14 +0.6 904,738 - ABIE53_004713 0.14 -0.8 904,738 - ABIE53_004713 0.14 +1.6 904,738 - ABIE53_004713 0.14 +1.5 904,738 - ABIE53_004713 0.14 +3.3 904,873 + ABIE53_004713 0.39 -1.5 904,873 + ABIE53_004713 0.39 -1.1 904,873 + ABIE53_004713 0.39 -0.6 904,873 + ABIE53_004713 0.39 -0.6 904,873 + ABIE53_004713 0.39 -0.6 904,873 + ABIE53_004713 0.39 +0.1 904,873 + ABIE53_004713 0.39 -3.0 904,874 - ABIE53_004713 0.40 -1.2 904,874 - ABIE53_004713 0.40 -1.5 904,874 - ABIE53_004713 0.40 +0.2 904,874 - ABIE53_004713 0.40 +5.2 905,075 - ABIE53_004713 0.78 +1.9 905,171 - +0.6 905,171 - -1.6 905,171 - -2.3 905,235 + +0.0 905,235 + -2.1 905,235 + +1.5 905,236 - +0.7 905,236 - -2.7 905,236 - -2.3 905,236 - -0.2 905,259 + -1.4 905,259 + -2.8 905,259 + -2.6 905,259 + +0.6 905,259 + +0.5 905,259 + -0.6 905,259 + +2.2 905,259 + +3.3 905,260 - -2.5 905,427 + ABIE53_004714 0.17 -2.4 905,517 + ABIE53_004714 0.25 +0.2 905,532 + ABIE53_004714 0.27 -0.5 905,533 - ABIE53_004714 0.27 -1.9 905,610 + ABIE53_004714 0.34 +2.7 905,610 + ABIE53_004714 0.34 +0.9 905,610 + ABIE53_004714 0.34 +2.5 905,611 - ABIE53_004714 0.34 -0.3 905,611 - ABIE53_004714 0.34 -2.6 905,611 - ABIE53_004714 0.34 -1.2 905,622 + ABIE53_004714 0.36 -0.3 905,622 + ABIE53_004714 0.36 -0.6 905,622 + ABIE53_004714 0.36 +1.2 905,622 + ABIE53_004714 0.36 -0.6 905,622 + ABIE53_004714 0.36 -0.8 905,622 + ABIE53_004714 0.36 +0.4 905,622 + ABIE53_004714 0.36 -0.7 905,622 + ABIE53_004714 0.36 -4.2 905,622 + ABIE53_004714 0.36 -0.2 905,622 + ABIE53_004714 0.36 -0.4 905,622 + ABIE53_004714 0.36 -1.0 905,622 + ABIE53_004714 0.36 +1.4 905,622 + ABIE53_004714 0.36 -0.2 905,622 + ABIE53_004714 0.36 -0.2 905,622 + ABIE53_004714 0.36 -0.8 905,622 + ABIE53_004714 0.36 +1.6 905,622 + ABIE53_004714 0.36 +1.3 905,622 + ABIE53_004714 0.36 -0.4 905,622 + ABIE53_004714 0.36 -3.3 905,623 - ABIE53_004714 0.36 +0.8 905,623 - ABIE53_004714 0.36 -0.4 905,623 - ABIE53_004714 0.36 -1.0 905,623 - ABIE53_004714 0.36 -0.8 905,623 - ABIE53_004714 0.36 -0.2 905,623 - ABIE53_004714 0.36 -0.6 905,623 - ABIE53_004714 0.36 +0.3 905,623 - ABIE53_004714 0.36 +0.8 905,623 - ABIE53_004714 0.36 -0.6 905,623 - ABIE53_004714 0.36 +0.4 905,623 - ABIE53_004714 0.36 +0.5 905,623 - ABIE53_004714 0.36 +2.3 905,623 - ABIE53_004714 0.36 -0.6 905,709 + ABIE53_004714 0.44 +2.4 905,709 + ABIE53_004714 0.44 +1.8 905,710 - ABIE53_004714 0.44 -0.4 905,710 - ABIE53_004714 0.44 -0.0 905,710 - ABIE53_004714 0.44 -1.0 905,711 + ABIE53_004714 0.44 -1.2 905,711 + ABIE53_004714 0.44 +1.2 905,712 - ABIE53_004714 0.44 +0.5 905,730 + ABIE53_004714 0.46 +1.3 905,730 + ABIE53_004714 0.46 +0.2 905,730 + ABIE53_004714 0.46 +1.4 905,730 + ABIE53_004714 0.46 -1.7 905,730 + ABIE53_004714 0.46 -1.6 905,730 + ABIE53_004714 0.46 -2.7 905,730 + ABIE53_004714 0.46 -1.4 905,730 + ABIE53_004714 0.46 +0.2 905,730 + ABIE53_004714 0.46 -0.8 905,731 - ABIE53_004714 0.46 -1.4 905,731 - ABIE53_004714 0.46 -0.9 905,731 - ABIE53_004714 0.46 -1.2 905,731 - ABIE53_004714 0.46 -0.6 905,731 - ABIE53_004714 0.46 +0.9 905,731 - ABIE53_004714 0.46 +1.4 905,731 - ABIE53_004714 0.46 -1.0 905,731 - ABIE53_004714 0.46 -0.5 905,731 - ABIE53_004714 0.46 +0.8 905,731 - ABIE53_004714 0.46 +1.1 905,783 + ABIE53_004714 0.51 +3.1 905,783 + ABIE53_004714 0.51 -1.4 905,784 - ABIE53_004714 0.51 +1.3 905,821 - ABIE53_004714 0.55 +1.6 905,851 - ABIE53_004714 0.58 -1.7 906,183 + ABIE53_004714 0.90 +0.3 906,183 + ABIE53_004714 0.90 -0.2 906,183 + ABIE53_004714 0.90 -0.1 906,184 - ABIE53_004714 0.90 -0.6 906,184 - ABIE53_004714 0.90 -1.3 906,314 + -0.8 906,314 + -2.4 906,314 + -0.2 906,314 + +2.5 906,314 + +1.2 906,314 + +0.1 906,314 + +3.3 906,314 + -0.6 906,314 + -2.8 906,315 - -2.4 906,315 - -0.9 906,315 - -0.6 906,315 - -0.1 906,332 + -2.5 906,333 - +0.7 906,333 - -0.2 906,351 - +0.9 906,351 - -0.3 906,351 - +2.4 907,010 - ABIE53_004715 0.50 +0.8 907,154 + ABIE53_004715 0.60 +0.2 907,154 + ABIE53_004715 0.60 -1.4 907,154 + ABIE53_004715 0.60 +0.4 907,155 - ABIE53_004715 0.60 -0.2 907,155 - ABIE53_004715 0.60 -0.9 907,155 - ABIE53_004715 0.60 -0.2 907,155 - ABIE53_004715 0.60 -0.8 907,155 - ABIE53_004715 0.60 -0.8 907,155 - ABIE53_004715 0.60 -0.8 907,155 - ABIE53_004715 0.60 -0.8 907,155 - ABIE53_004715 0.60 -1.5 907,172 + ABIE53_004715 0.61 -3.4 907,172 + ABIE53_004715 0.61 -1.3 907,172 + ABIE53_004715 0.61 -1.2 907,172 + ABIE53_004715 0.61 +0.8 907,173 - ABIE53_004715 0.62 +0.8 907,173 - ABIE53_004715 0.62 -0.6
Or see this region's nucleotide sequence