Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003063

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,460,562	-		ABIE53_003062	0.41	+0.8
3,460,562	-		ABIE53_003062	0.41	-4.1
3,460,684	-		ABIE53_003062	0.50	-3.4
3,460,698	+		ABIE53_003062	0.51	-0.2
3,460,699	-		ABIE53_003062	0.52	-4.2
3,460,945	+		ABIE53_003062	0.70	-0.5
3,460,945	+		ABIE53_003062	0.70	-1.2
3,460,945	+		ABIE53_003062	0.70	-2.0
3,460,945	+		ABIE53_003062	0.70	-3.3
3,460,945	+		ABIE53_003062	0.70	-1.2
3,460,945	+		ABIE53_003062	0.70	+1.3
3,460,945	+		ABIE53_003062	0.70	+0.2
3,460,945	+		ABIE53_003062	0.70	+1.8
3,460,945	+		ABIE53_003062	0.70	-1.2
3,460,946	-		ABIE53_003062	0.70	-1.9
3,460,946	-		ABIE53_003062	0.70	+0.3
3,460,946	-		ABIE53_003062	0.70	-5.9
3,460,946	-		ABIE53_003062	0.70	-1.4
3,461,031	+		ABIE53_003062	0.77	-2.9
3,461,031	+		ABIE53_003062	0.77	-3.7
3,461,031	+		ABIE53_003062	0.77	+1.8
3,461,031	+		ABIE53_003062	0.77	-0.8
3,461,031	+		ABIE53_003062	0.77	-2.2
3,461,031	+		ABIE53_003062	0.77	-1.1
3,461,031	+		ABIE53_003062	0.77	-1.3
3,461,031	+		ABIE53_003062	0.77	-4.8
3,461,032	+		ABIE53_003062	0.77	-3.7
3,461,032	-		ABIE53_003062	0.77	-4.3
3,461,032	-		ABIE53_003062	0.77	-1.9
3,461,032	-		ABIE53_003062	0.77	-3.9
3,461,032	-		ABIE53_003062	0.77	-1.9
3,461,032	-		ABIE53_003062	0.77	-1.2
3,461,032	-		ABIE53_003062	0.77	-2.9
3,461,303	+				-2.3
3,461,303	+				+0.4
3,461,303	+				-0.8
3,461,303	+				-3.9
3,461,303	+				-0.7
3,461,303	+				-3.6
3,461,304	-				-3.4
3,461,304	-				+0.8
3,461,328	+				-1.0
3,461,328	+				+1.4
3,461,328	+				+4.7
3,461,343	+				-1.5
3,461,344	-				-3.4
3,461,384	-				-0.2
3,461,390	+				+1.2
3,461,390	+				+0.8
3,461,390	+				+0.9
3,461,391	-				+1.0
3,461,396	+				-4.0
3,461,396	+				-1.9
3,461,396	+				-1.7
3,461,416	+				-2.0
3,461,416	+				-1.0
3,461,416	+				-2.2
3,461,416	+				-1.2
3,461,417	-				-1.6
3,461,417	-				+0.3
3,461,417	-				+0.0
3,461,417	-				+0.4
3,461,417	-				-0.2
3,461,469	+		ABIE53_003063	0.18	-1.6
3,461,469	+		ABIE53_003063	0.18	-1.9
3,461,469	+		ABIE53_003063	0.18	-1.4
3,461,469	+		ABIE53_003063	0.18	-3.2
3,461,469	+		ABIE53_003063	0.18	-1.4
3,461,469	+		ABIE53_003063	0.18	+0.9
3,461,469	+		ABIE53_003063	0.18	-1.9
3,461,469	+		ABIE53_003063	0.18	-0.6
3,461,470	-		ABIE53_003063	0.18	-0.4
3,461,470	-		ABIE53_003063	0.18	+0.0
3,461,470	-		ABIE53_003063	0.18	-3.6
3,461,470	-		ABIE53_003063	0.18	-2.4
3,461,470	-		ABIE53_003063	0.18	-1.8
3,461,470	-		ABIE53_003063	0.18	-2.6
3,461,470	-		ABIE53_003063	0.18	-1.7
3,461,470	-		ABIE53_003063	0.18	-1.4
3,461,470	-		ABIE53_003063	0.18	-3.3
3,461,470	-		ABIE53_003063	0.18	-1.8
3,461,470	-		ABIE53_003063	0.18	-1.4
3,461,479	+		ABIE53_003063	0.22	-0.2
3,461,480	-		ABIE53_003063	0.22	-1.4
3,461,480	-		ABIE53_003063	0.22	-2.5
3,461,480	-		ABIE53_003063	0.22	-1.8
3,461,499	+		ABIE53_003063	0.29	+0.2
3,461,500	-		ABIE53_003063	0.29	-0.2
3,461,536	+		ABIE53_003063	0.42	-2.1
3,461,626	+		ABIE53_003063	0.75	+0.1
3,461,626	+		ABIE53_003063	0.75	-2.0
3,461,626	+		ABIE53_003063	0.75	+0.3
3,461,626	+		ABIE53_003063	0.75	-0.8
3,461,627	-		ABIE53_003063	0.75	-3.1
3,461,627	-		ABIE53_003063	0.75	-1.6
3,461,627	-		ABIE53_003063	0.75	-0.8
3,461,627	-		ABIE53_003063	0.75	-0.4
3,461,844	+				-0.3
3,461,845	-				-0.2
3,462,127	+		ABIE53_003065	0.22	+1.0
3,462,127	+		ABIE53_003065	0.22	-0.9
3,462,128	-		ABIE53_003065	0.22	+0.1
3,462,178	+		ABIE53_003065	0.25	+1.4
3,462,178	+		ABIE53_003065	0.25	-1.2
3,462,178	+		ABIE53_003065	0.25	-0.4
3,462,179	-		ABIE53_003065	0.25	-1.4
3,462,236	+		ABIE53_003065	0.29	+0.8
3,462,238	+		ABIE53_003065	0.29	-1.4
3,462,238	+		ABIE53_003065	0.29	+1.0
3,462,238	+		ABIE53_003065	0.29	-0.6
3,462,238	+		ABIE53_003065	0.29	+3.7
3,462,238	+		ABIE53_003065	0.29	+1.3
3,462,238	+		ABIE53_003065	0.29	-1.0
3,462,238	+		ABIE53_003065	0.29	-1.0
3,462,238	+		ABIE53_003065	0.29	-0.7
3,462,238	+		ABIE53_003065	0.29	-0.6
3,462,239	-		ABIE53_003065	0.30	-1.4
3,462,239	-		ABIE53_003065	0.30	-0.2
3,462,239	-		ABIE53_003065	0.30	+0.3
3,462,239	-		ABIE53_003065	0.30	-1.4
3,462,239	-		ABIE53_003065	0.30	+2.0
3,462,239	-		ABIE53_003065	0.30	+3.3
3,462,239	-		ABIE53_003065	0.30	-1.0
3,462,239	-		ABIE53_003065	0.30	+1.5
3,462,239	-		ABIE53_003065	0.30	+1.5
3,462,239	-		ABIE53_003065	0.30	-0.4
3,462,239	-		ABIE53_003065	0.30	-1.0
3,462,239	-		ABIE53_003065	0.30	-2.7
3,462,239	-		ABIE53_003065	0.30	+0.0
3,462,239	-		ABIE53_003065	0.30	-0.9
3,462,239	-		ABIE53_003065	0.30	-0.6
3,462,239	-		ABIE53_003065	0.30	-0.8
3,462,239	-		ABIE53_003065	0.30	+0.8
3,462,349	+		ABIE53_003065	0.37	-0.2
3,462,349	+		ABIE53_003065	0.37	+1.6
3,462,350	-		ABIE53_003065	0.37	+0.2
3,462,350	-		ABIE53_003065	0.37	-1.7
3,462,441	+		ABIE53_003065	0.43	-2.6
3,462,442	-		ABIE53_003065	0.43	+1.8
3,462,514	+		ABIE53_003065	0.48	+3.1
3,462,514	+		ABIE53_003065	0.48	-1.9