Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002972

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,364,044	+		ABIE53_002971	0.62	-1.0
3,364,044	+		ABIE53_002971	0.62	-0.2
3,364,044	+		ABIE53_002971	0.62	+1.2
3,364,044	+		ABIE53_002971	0.62	+2.6
3,364,045	-		ABIE53_002971	0.62	+0.8
3,364,045	-		ABIE53_002971	0.62	+0.8
3,364,077	+		ABIE53_002971	0.65	-0.6
3,364,077	+		ABIE53_002971	0.65	-1.4
3,364,078	-		ABIE53_002971	0.65	-1.2
3,364,078	-		ABIE53_002971	0.65	+1.8
3,364,078	-		ABIE53_002971	0.65	-1.6
3,364,273	-		ABIE53_002971	0.78	+3.1
3,364,273	-		ABIE53_002971	0.78	-1.2
3,364,418	+		ABIE53_002971	0.88	+4.4
3,364,418	+		ABIE53_002971	0.88	-1.4
3,364,419	-		ABIE53_002971	0.89	+2.4
3,364,582	+				+1.0
3,364,582	+				+0.4
3,364,582	+				-0.2
3,364,582	+				+1.2
3,364,583	-				-1.8
3,364,583	-				+0.5
3,364,622	+				+0.6
3,364,622	+				+0.4
3,364,623	-				+1.8
3,364,623	-				-1.4
3,364,633	+				-1.1
3,364,633	+				+0.8
3,364,633	+				-0.4
3,364,633	+				-0.6
3,364,633	+				+1.2
3,364,633	+				-0.6
3,364,633	+				+0.4
3,364,633	+				+2.6
3,364,633	+				-1.5
3,364,633	+				+0.5
3,364,633	+				+0.2
3,364,633	+				+0.9
3,364,633	+				+1.8
3,364,634	-				-1.2
3,364,634	-				-1.2
3,364,634	-				+0.2
3,364,634	-				-0.9
3,364,634	-				+0.2
3,364,634	-				-0.5
3,364,634	-				-0.2
3,364,634	-				-1.9
3,364,687	+				+1.0
3,364,694	+				-2.1
3,364,694	+				-1.6
3,364,694	+				-0.6
3,364,694	+				-1.6
3,364,694	+				+1.6
3,364,694	+				+0.2
3,364,695	-				-1.6
3,364,695	-				-0.4
3,364,695	-				+0.2
3,364,793	+				+0.2
3,364,793	+				-1.2
3,364,794	-				-0.8
3,364,794	-				-2.0
3,364,794	-				-1.0
3,364,845	+				-3.0
3,364,846	-				-2.3
3,364,853	+				-2.1
3,364,853	+				-1.3
3,364,854	-				+1.0
3,364,854	-				+0.5
3,364,854	-				+2.3
3,364,854	-				+0.5
3,364,854	-				-0.2
3,364,949	+				+1.2
3,364,950	-				-2.9
3,364,950	-				+1.0
3,365,186	+		ABIE53_002972	0.25	+0.6
3,365,186	+		ABIE53_002972	0.25	-0.2
3,365,186	+		ABIE53_002972	0.25	-0.9
3,365,186	+		ABIE53_002972	0.25	-0.6
3,365,187	-		ABIE53_002972	0.25	-1.8
3,365,187	-		ABIE53_002972	0.25	-0.6
3,365,187	-		ABIE53_002972	0.25	+0.2
3,365,198	+		ABIE53_002972	0.25	-0.6
3,365,198	+		ABIE53_002972	0.25	+2.5
3,365,199	-		ABIE53_002972	0.26	-1.9
3,365,283	-		ABIE53_002972	0.31	+0.1
3,365,304	+		ABIE53_002972	0.32	-1.6
3,365,304	+		ABIE53_002972	0.32	-1.2
3,365,305	-		ABIE53_002972	0.32	-1.7
3,365,330	+		ABIE53_002972	0.34	-0.2
3,365,330	+		ABIE53_002972	0.34	+0.1
3,365,330	+		ABIE53_002972	0.34	-0.3
3,365,331	-		ABIE53_002972	0.34	-1.7
3,365,331	-		ABIE53_002972	0.34	-0.1
3,365,331	-		ABIE53_002972	0.34	-1.4
3,365,331	-		ABIE53_002972	0.34	+0.2
3,365,331	-		ABIE53_002972	0.34	+1.8
3,365,331	-		ABIE53_002972	0.34	-1.9
3,365,417	+		ABIE53_002972	0.39	+0.5
3,365,733	-		ABIE53_002972	0.59	-1.4
3,365,792	+		ABIE53_002972	0.63	+0.2
3,365,793	-		ABIE53_002972	0.63	-0.6
3,365,793	-		ABIE53_002972	0.63	-1.6
3,365,846	+		ABIE53_002972	0.67	-0.2
3,365,846	+		ABIE53_002972	0.67	-0.2
3,365,847	-		ABIE53_002972	0.67	+0.6
3,365,847	-		ABIE53_002972	0.67	-1.2
3,365,847	-		ABIE53_002972	0.67	-0.4
3,365,847	-		ABIE53_002972	0.67	-0.8
3,365,847	-		ABIE53_002972	0.67	-0.8
3,365,966	+		ABIE53_002972	0.74	+0.2
3,365,966	+		ABIE53_002972	0.74	-0.6
3,365,966	+		ABIE53_002972	0.74	-0.9
3,365,967	-		ABIE53_002972	0.74	+0.8
3,365,967	-		ABIE53_002972	0.74	-0.6
3,366,002	+		ABIE53_002972	0.76	-3.1
3,366,003	-		ABIE53_002972	0.76	-1.2
3,366,031	+		ABIE53_002972	0.78	-0.6
3,366,031	+		ABIE53_002972	0.78	-0.8
3,366,032	-		ABIE53_002972	0.78	+0.4
3,366,032	-		ABIE53_002972	0.78	+0.8
3,366,032	-		ABIE53_002972	0.78	-0.0
3,366,032	-		ABIE53_002972	0.78	+1.3
3,366,098	+		ABIE53_002972	0.83	-0.6
3,366,098	+		ABIE53_002972	0.83	+0.2
3,366,099	-		ABIE53_002972	0.83	-1.5
3,366,099	-		ABIE53_002972	0.83	+0.0
3,366,099	-		ABIE53_002972	0.83	+0.7
3,366,099	-		ABIE53_002972	0.83	-0.3
3,366,227	+				+0.4
3,366,227	+				+2.4
3,366,228	-				+0.8
3,366,422	+				+0.8
3,366,422	+				-0.8
3,366,422	+				+0.6
3,366,423	-				-1.7
3,366,423	-				+1.5
3,366,423	-				+0.7
3,366,535	-				+0.7
3,366,541	+				-0.8
3,366,541	+				-0.4
3,366,541	+				-0.6
3,366,541	+				+1.0
3,366,541	+				+0.4
3,366,541	+				-0.2
3,366,542	-				+0.0
3,366,542	-				+0.2
3,366,542	-				-0.4
3,366,542	-				+0.1
3,366,542	-				-1.7
3,366,662	-				-1.2
3,366,662	-				+1.8
3,366,662	-				+2.9
3,366,663	+				-0.2
3,366,705	+				+1.0
3,366,705	+				-0.9
3,366,705	+				-0.6
3,366,706	-				+0.8
3,366,706	-				-0.1
3,366,711	+				-1.0
3,366,711	+				+0.2
3,366,774	+				+0.3
3,366,813	+		ABIE53_002973	0.12	+0.2
3,366,813	+		ABIE53_002973	0.12	-1.1
3,366,814	-		ABIE53_002973	0.12	-1.4
3,366,814	-		ABIE53_002973	0.12	+1.1
3,366,840	+		ABIE53_002973	0.15	-1.0
3,366,840	+		ABIE53_002973	0.15	-0.8
3,366,841	-		ABIE53_002973	0.15	+2.8
3,367,356	+		ABIE53_002973	0.77	-1.0
3,367,356	+		ABIE53_002973	0.77	-1.2
3,367,357	-		ABIE53_002973	0.77	-0.4