Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_001127 and ABIE53_001128 are separated by 347 nucleotides ABIE53_001128 and ABIE53_001129 are separated by 10 nucleotides ABIE53_001129 and ABIE53_001130 overlap by 14 nucleotides ABIE53_001130 and ABIE53_001131 are separated by 74 nucleotides
ABIE53_001127: ABIE53_001127 - hypothetical protein, at 1,249,904 to 1,251,313
_001127
ABIE53_001128: ABIE53_001128 - putative transcriptional regulator, at 1,251,661 to 1,252,239
_001128
ABIE53_001129: ABIE53_001129 - putative Holliday junction resolvase, at 1,252,250 to 1,252,690
_001129
ABIE53_001130: ABIE53_001130 - pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, at 1,252,677 to 1,253,216
_001130
ABIE53_001131: ABIE53_001131 - aspartate carbamoyltransferase catalytic subunit, at 1,253,291 to 1,254,316
_001131
Position (kb) 1252
1253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1251.373 kb on + strand at 1251.374 kb on - strand at 1251.374 kb on - strand at 1251.374 kb on - strand at 1251.374 kb on - strand at 1251.374 kb on - strand at 1251.394 kb on + strand at 1251.394 kb on + strand at 1251.394 kb on + strand at 1251.394 kb on + strand at 1251.394 kb on + strand at 1251.394 kb on + strand at 1251.394 kb on + strand at 1251.395 kb on - strand at 1251.395 kb on - strand at 1251.395 kb on - strand at 1251.546 kb on + strand at 1251.546 kb on + strand at 1251.546 kb on + strand at 1251.546 kb on + strand at 1251.546 kb on + strand at 1251.546 kb on + strand at 1251.546 kb on + strand at 1251.546 kb on + strand at 1251.546 kb on + strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.547 kb on - strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.660 kb on + strand at 1251.666 kb on + strand at 1251.666 kb on + strand at 1251.666 kb on + strand at 1251.666 kb on + strand at 1251.666 kb on + strand at 1251.666 kb on + strand at 1251.672 kb on + strand at 1251.672 kb on + strand at 1251.672 kb on + strand at 1251.754 kb on + strand, within ABIE53_001128 at 1251.754 kb on + strand, within ABIE53_001128 at 1251.754 kb on + strand, within ABIE53_001128 at 1251.754 kb on + strand, within ABIE53_001128 at 1251.813 kb on + strand, within ABIE53_001128 at 1251.814 kb on - strand, within ABIE53_001128 at 1251.886 kb on + strand, within ABIE53_001128 at 1251.886 kb on + strand, within ABIE53_001128 at 1251.886 kb on + strand, within ABIE53_001128 at 1251.886 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.948 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1251.952 kb on + strand, within ABIE53_001128 at 1252.702 kb on + strand at 1252.702 kb on + strand at 1252.702 kb on + strand at 1252.702 kb on + strand at 1252.703 kb on - strand at 1252.704 kb on + strand at 1252.705 kb on - strand at 1252.705 kb on - strand at 1252.738 kb on - strand, within ABIE53_001130 at 1252.794 kb on + strand, within ABIE53_001130 at 1252.794 kb on + strand, within ABIE53_001130 at 1252.794 kb on + strand, within ABIE53_001130 at 1252.795 kb on - strand, within ABIE53_001130 at 1252.795 kb on - strand, within ABIE53_001130 at 1252.887 kb on + strand, within ABIE53_001130 at 1252.887 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.980 kb on + strand, within ABIE53_001130 at 1252.981 kb on - strand, within ABIE53_001130 at 1252.981 kb on - strand, within ABIE53_001130 at 1252.981 kb on - strand, within ABIE53_001130 at 1252.981 kb on - strand, within ABIE53_001130 at 1253.019 kb on + strand, within ABIE53_001130 at 1253.019 kb on + strand, within ABIE53_001130 at 1253.020 kb on - strand, within ABIE53_001130 at 1253.020 kb on - strand, within ABIE53_001130 at 1253.020 kb on - strand, within ABIE53_001130 at 1253.020 kb on - strand, within ABIE53_001130 at 1253.020 kb on - strand, within ABIE53_001130 at 1253.020 kb on - strand, within ABIE53_001130 at 1253.020 kb on - strand, within ABIE53_001130 at 1253.196 kb on - strand at 1253.272 kb on + strand at 1253.272 kb on + strand at 1253.272 kb on + strand at 1253.272 kb on + strand at 1253.273 kb on - strand at 1253.273 kb on - strand at 1253.285 kb on + strand at 1253.285 kb on + strand at 1253.285 kb on + strand at 1253.285 kb on + strand at 1253.285 kb on + strand at 1253.285 kb on + strand at 1253.285 kb on + strand at 1253.285 kb on + strand at 1253.285 kb on + strand at 1253.286 kb on - strand at 1253.286 kb on - strand at 1253.286 kb on - strand at 1253.351 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 1,251,373 + +0.2 1,251,374 - +2.2 1,251,374 - -0.2 1,251,374 - +1.3 1,251,374 - -0.5 1,251,374 - -2.5 1,251,394 + -1.1 1,251,394 + +0.6 1,251,394 + -0.9 1,251,394 + +2.2 1,251,394 + +0.8 1,251,394 + +0.2 1,251,394 + +0.4 1,251,395 - -0.2 1,251,395 - +1.8 1,251,395 - -0.8 1,251,546 + +0.5 1,251,546 + -2.7 1,251,546 + +1.0 1,251,546 + -1.9 1,251,546 + -0.2 1,251,546 + -1.4 1,251,546 + -0.2 1,251,546 + +0.5 1,251,546 + +0.9 1,251,547 - -2.0 1,251,547 - +0.3 1,251,547 - -1.4 1,251,547 - +0.4 1,251,547 - -2.0 1,251,547 - +0.2 1,251,547 - +0.2 1,251,547 - +2.3 1,251,547 - +1.1 1,251,547 - +0.2 1,251,547 - -2.5 1,251,660 + -1.1 1,251,660 + -3.3 1,251,660 + -0.6 1,251,660 + -0.3 1,251,660 + +0.6 1,251,660 + +0.1 1,251,660 + -3.3 1,251,660 + +0.6 1,251,660 + +0.8 1,251,660 + -1.7 1,251,660 + +1.2 1,251,660 + +0.2 1,251,660 + -0.1 1,251,660 + -0.3 1,251,660 + +0.5 1,251,660 + -1.7 1,251,660 + +1.3 1,251,660 + +0.3 1,251,660 + -1.9 1,251,660 + -0.8 1,251,660 + -0.8 1,251,660 + +6.5 1,251,666 + -1.4 1,251,666 + -1.4 1,251,666 + +1.8 1,251,666 + +1.2 1,251,666 + +1.8 1,251,666 + -2.3 1,251,672 + -1.4 1,251,672 + +1.8 1,251,672 + -2.5 1,251,754 + ABIE53_001128 0.16 -2.0 1,251,754 + ABIE53_001128 0.16 -1.0 1,251,754 + ABIE53_001128 0.16 -2.7 1,251,754 + ABIE53_001128 0.16 +0.2 1,251,813 + ABIE53_001128 0.26 -3.0 1,251,814 - ABIE53_001128 0.26 -1.2 1,251,886 + ABIE53_001128 0.39 +2.8 1,251,886 + ABIE53_001128 0.39 -0.0 1,251,886 + ABIE53_001128 0.39 -2.4 1,251,886 + ABIE53_001128 0.39 -2.3 1,251,948 + ABIE53_001128 0.50 +0.7 1,251,948 + ABIE53_001128 0.50 +1.8 1,251,948 + ABIE53_001128 0.50 +1.3 1,251,948 + ABIE53_001128 0.50 +0.8 1,251,948 + ABIE53_001128 0.50 -0.2 1,251,948 + ABIE53_001128 0.50 -1.9 1,251,948 + ABIE53_001128 0.50 +1.4 1,251,948 + ABIE53_001128 0.50 -0.5 1,251,948 + ABIE53_001128 0.50 -3.6 1,251,948 + ABIE53_001128 0.50 +0.7 1,251,948 + ABIE53_001128 0.50 +0.7 1,251,948 + ABIE53_001128 0.50 +0.2 1,251,948 + ABIE53_001128 0.50 -2.7 1,251,948 + ABIE53_001128 0.50 +1.0 1,251,948 + ABIE53_001128 0.50 +0.2 1,251,948 + ABIE53_001128 0.50 +1.2 1,251,952 + ABIE53_001128 0.50 +0.5 1,251,952 + ABIE53_001128 0.50 -1.2 1,251,952 + ABIE53_001128 0.50 -2.1 1,251,952 + ABIE53_001128 0.50 -1.5 1,251,952 + ABIE53_001128 0.50 -0.2 1,251,952 + ABIE53_001128 0.50 +2.0 1,251,952 + ABIE53_001128 0.50 +0.2 1,251,952 + ABIE53_001128 0.50 +1.6 1,251,952 + ABIE53_001128 0.50 -1.8 1,251,952 + ABIE53_001128 0.50 +0.2 1,251,952 + ABIE53_001128 0.50 -0.2 1,252,702 + +0.6 1,252,702 + +1.3 1,252,702 + -2.1 1,252,702 + +0.6 1,252,703 - +0.2 1,252,704 + +0.8 1,252,705 - -0.2 1,252,705 - -1.6 1,252,738 - ABIE53_001130 0.11 -0.2 1,252,794 + ABIE53_001130 0.22 -1.1 1,252,794 + ABIE53_001130 0.22 +1.1 1,252,794 + ABIE53_001130 0.22 +1.3 1,252,795 - ABIE53_001130 0.22 +0.8 1,252,795 - ABIE53_001130 0.22 -1.0 1,252,887 + ABIE53_001130 0.39 -0.5 1,252,887 + ABIE53_001130 0.39 -1.7 1,252,980 + ABIE53_001130 0.56 +1.4 1,252,980 + ABIE53_001130 0.56 -0.3 1,252,980 + ABIE53_001130 0.56 -0.1 1,252,980 + ABIE53_001130 0.56 -1.0 1,252,980 + ABIE53_001130 0.56 +1.1 1,252,980 + ABIE53_001130 0.56 -1.7 1,252,980 + ABIE53_001130 0.56 +2.4 1,252,980 + ABIE53_001130 0.56 -1.0 1,252,980 + ABIE53_001130 0.56 -0.8 1,252,980 + ABIE53_001130 0.56 -0.4 1,252,981 - ABIE53_001130 0.56 +1.6 1,252,981 - ABIE53_001130 0.56 +0.3 1,252,981 - ABIE53_001130 0.56 +0.6 1,252,981 - ABIE53_001130 0.56 -2.0 1,253,019 + ABIE53_001130 0.63 +0.7 1,253,019 + ABIE53_001130 0.63 +1.6 1,253,020 - ABIE53_001130 0.64 +0.9 1,253,020 - ABIE53_001130 0.64 -2.0 1,253,020 - ABIE53_001130 0.64 -0.1 1,253,020 - ABIE53_001130 0.64 -0.5 1,253,020 - ABIE53_001130 0.64 -0.1 1,253,020 - ABIE53_001130 0.64 +1.2 1,253,020 - ABIE53_001130 0.64 +0.7 1,253,196 - -1.7 1,253,272 + -0.5 1,253,272 + +0.5 1,253,272 + -0.9 1,253,272 + -0.6 1,253,273 - +0.5 1,253,273 - -0.4 1,253,285 + -1.2 1,253,285 + -0.1 1,253,285 + +0.5 1,253,285 + -0.4 1,253,285 + +0.5 1,253,285 + -0.2 1,253,285 + -0.1 1,253,285 + +0.6 1,253,285 + +0.1 1,253,286 - -2.3 1,253,286 - +1.0 1,253,286 - -2.2 1,253,351 + +0.5
Or see this region's nucleotide sequence