Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4763

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
6,247,696	+				-0.5
6,247,743	-				+0.8
6,247,743	-				-3.9
6,247,747	-				-1.8
6,247,759	-				-2.1
6,247,767	-				+0.2
6,247,771	-				-2.6
6,247,791	-				+1.1
6,247,794	+				-1.7
6,247,797	-				-2.1
6,247,807	-				-2.9
6,247,811	-				-0.7
6,247,811	-				-2.4
6,247,871	-				+0.3
6,247,895	-				-2.6
6,247,907	+				+0.9
6,248,016	-				-0.4
6,248,016	-				+0.7
6,248,072	-				-1.9
6,248,072	-				-0.1
6,248,239	-				-1.9
6,248,239	-				-0.4
6,248,306	-		BT4762	0.13	+0.9
6,248,437	-		BT4762	0.43	-0.9
6,248,478	-		BT4762	0.52	-2.1
6,248,478	-		BT4762	0.52	-0.8
6,248,478	-		BT4762	0.52	-1.3
6,248,478	-		BT4762	0.52	-2.3
6,248,534	-		BT4762	0.65	-2.6
6,248,651	-				-1.9
6,248,651	-				-0.1
6,248,665	-				-0.2
6,248,989	+		BT4763	0.61	-2.1
6,248,992	-		BT4763	0.61	-0.1
6,249,017	-		BT4763	0.66	-2.0
6,249,019	-		BT4763	0.67	-3.4
6,249,181	+				-0.0
6,249,192	+				+1.1
6,249,208	+				-1.1
6,249,209	-				-0.6
6,249,262	-				-0.7
6,249,630	+		BT4764	0.47	+1.0
6,249,678	+		BT4764	0.53	-0.9
6,249,679	-		BT4764	0.53	-1.4
6,249,905	+		BT4764	0.77	+0.9
6,250,180	-				-1.0