Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4464

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
5,873,221	+				-0.4
5,873,231	-				-1.1
5,873,313	-		BT4463	0.10	-1.9
5,873,313	-		BT4463	0.10	-1.0
5,873,313	-		BT4463	0.10	-1.2
5,873,313	-		BT4463	0.10	-2.4
5,873,362	-		BT4463	0.15	-1.1
5,873,449	+		BT4463	0.24	-1.9
5,873,449	+		BT4463	0.24	-1.0
5,873,455	-		BT4463	0.25	-0.7
5,873,494	+		BT4463	0.29	-0.1
5,873,748	+		BT4463	0.55	+1.2
5,873,749	-		BT4463	0.56	-1.9
5,873,766	+		BT4463	0.57	-0.7
5,873,777	+		BT4463	0.59	-2.1
5,873,778	-		BT4463	0.59	-1.7
5,873,778	-		BT4463	0.59	+0.2
5,873,793	+		BT4463	0.60	-1.5
5,873,800	+		BT4463	0.61	-1.1
5,873,800	+		BT4463	0.61	-0.3
5,873,821	+		BT4463	0.63	-2.0
5,873,831	-		BT4463	0.64	+0.9
5,874,000	-		BT4463	0.82	-1.8
5,874,038	+		BT4463	0.86	-0.3
5,874,039	-		BT4463	0.86	-0.1
5,874,039	-		BT4463	0.86	-0.4
5,874,117	+				-2.5
5,874,117	+				-1.1
5,874,118	-				-1.5
5,874,127	-				-0.4
5,874,144	-				-0.9
5,874,150	+				-1.7
5,874,151	-				-1.0
5,874,163	-				-0.4
5,874,216	-				-0.2
5,874,249	-		BT4464	0.12	-0.1
5,874,251	-		BT4464	0.12	-1.1
5,874,256	+		BT4464	0.13	-0.1
5,874,257	-		BT4464	0.13	-1.7
5,874,384	+		BT4464	0.33	-3.0
5,874,471	+		BT4464	0.46	-1.1
5,874,487	+		BT4464	0.48	-3.2
5,874,528	-		BT4464	0.55	-1.7
5,874,586	+		BT4464	0.64	-0.8
5,874,587	-		BT4464	0.64	-1.1
5,874,590	+		BT4464	0.64	-1.1
5,874,591	-		BT4464	0.64	-1.1
5,874,659	-		BT4464	0.75	-1.1
5,874,659	-		BT4464	0.75	+0.9
5,874,659	-		BT4464	0.75	+0.1
5,874,701	+		BT4464	0.81	-2.9
5,874,761	-				-0.5
5,874,850	+				-1.1
5,874,851	-				-1.4
5,874,853	-				+0.3
5,874,969	+				-2.3
5,875,000	-				-1.1
5,875,013	+				-2.2
5,875,013	+				-2.7
5,875,058	-				+1.2
5,875,065	-				-2.3
5,875,067	+				-0.1
5,875,067	+				-0.7
5,875,080	-				-2.1
5,875,210	-		BT4465	0.11	-0.7
5,875,242	-		BT4465	0.12	+0.4
5,875,251	+		BT4465	0.13	-1.5
5,875,303	+		BT4465	0.15	-0.4
5,875,327	+		BT4465	0.17	-2.5
5,875,328	-		BT4465	0.17	+0.9
5,875,445	-		BT4465	0.23	-0.9
5,875,492	+		BT4465	0.26	-1.1
5,875,543	-		BT4465	0.28	-1.8
5,875,548	-		BT4465	0.29	-1.0
5,875,550	+		BT4465	0.29	-0.0
5,875,551	-		BT4465	0.29	-1.1
5,875,559	+		BT4465	0.29	-2.2
5,875,669	+		BT4465	0.35	-0.1
5,875,670	-		BT4465	0.35	-0.9
5,875,792	+		BT4465	0.42	-2.5
5,875,802	+		BT4465	0.42	-2.1
5,875,802	+		BT4465	0.42	+0.0
5,875,802	+		BT4465	0.42	+0.9